Analysis of interatomic Contacts of Structural Units in PDB entry:
8E98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E98 entry

There are 4 chains in PDB entry 8E98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLU 797
B	THR 31	CYS 798
C	LYS 25	GLU 797
D	THR 31	CYS 798

There are 83 helices in PDB entry 8E98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	53	Right-handed alpha
Helix 2	AA2	A	70	85	Right-handed alpha
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	143	145	Right-handed 310
Helix 5	AA5	A	146	159	Right-handed alpha
Helix 6	AA6	A	170	187	Right-handed alpha
Helix 7	AA7	A	204	212	Right-handed alpha
Helix 8	AA8	A	224	238	Right-handed alpha
Helix 9	AA9	A	255	260	Right-handed 310
Helix 10	AB1	A	278	296	Right-handed alpha
Helix 11	AB2	A	317	327	Right-handed alpha
Helix 12	AB3	A	458	471	Right-handed alpha
Helix 13	AB4	A	499	507	Right-handed alpha
Helix 14	AB5	A	520	527	Right-handed alpha
Helix 15	AB6	A	669	674	Right-handed alpha
Helix 16	AB7	A	687	695	Right-handed alpha
Helix 17	AB8	A	696	698	Right-handed 310
Helix 18	AB9	A	699	709	Right-handed alpha
Helix 19	AC1	A	714	723	Right-handed alpha
Helix 20	AC2	A	733	743	Right-handed alpha
Helix 21	AC3	A	768	783	Right-handed alpha
Helix 22	AC4	A	783	793	Right-handed alpha
Helix 23	AC5	B	42	49	Right-handed alpha
Helix 24	AC6	B	73	89	Right-handed alpha
Helix 25	AC7	B	104	116	Right-handed alpha
Helix 26	AC8	B	145	160	Right-handed alpha
Helix 27	AC9	B	175	189	Right-handed alpha
Helix 28	AD1	B	210	218	Right-handed alpha
Helix 29	AD2	B	229	242	Right-handed alpha
Helix 30	AD3	B	284	306	Right-handed alpha
Helix 31	AD4	B	328	335	Right-handed alpha
Helix 32	AD5	B	376	379	Right-handed 310
Helix 33	AD6	B	457	470	Right-handed alpha
Helix 34	AD7	B	492	500	Right-handed alpha
Helix 35	AD8	B	665	670	Right-handed alpha
Helix 36	AD9	B	687	696	Right-handed alpha
Helix 37	AE1	B	696	703	Right-handed alpha
Helix 38	AE2	B	710	721	Right-handed alpha
Helix 39	AE3	B	730	739	Right-handed alpha
Helix 40	AE4	B	748	752	Right-handed 310
Helix 41	AE5	B	768	783	Right-handed alpha
Helix 42	AE6	B	786	794	Right-handed alpha
Helix 43	AE7	C	36	53	Right-handed alpha
Helix 44	AE8	C	70	85	Right-handed alpha
Helix 45	AE9	C	104	114	Right-handed alpha
Helix 46	AF1	C	143	146	Right-handed 310
Helix 47	AF2	C	147	158	Right-handed alpha
Helix 48	AF3	C	172	187	Right-handed alpha
Helix 49	AF4	C	204	213	Right-handed alpha
Helix 50	AF5	C	224	238	Right-handed alpha
Helix 51	AF6	C	250	254	Right-handed 310
Helix 52	AF7	C	257	262	Right-handed alpha
Helix 53	AF8	C	278	297	Right-handed alpha
Helix 54	AF9	C	317	327	Right-handed alpha
Helix 55	AG1	C	457	470	Right-handed alpha
Helix 56	AG2	C	500	508	Right-handed alpha
Helix 57	AG3	C	520	525	Right-handed alpha
Helix 58	AG4	C	669	674	Right-handed alpha
Helix 59	AG5	C	687	695	Right-handed alpha
Helix 60	AG6	C	697	707	Right-handed alpha
Helix 61	AG7	C	713	723	Right-handed alpha
Helix 62	AG8	C	733	743	Right-handed alpha
Helix 63	AG9	C	768	783	Right-handed alpha
Helix 64	AH1	C	783	793	Right-handed alpha
Helix 65	AH2	D	42	51	Right-handed alpha
Helix 66	AH3	D	73	88	Right-handed alpha
Helix 67	AH4	D	104	116	Right-handed alpha
Helix 68	AH5	D	145	161	Right-handed alpha
Helix 69	AH6	D	174	187	Right-handed alpha
Helix 70	AH7	D	208	218	Right-handed alpha
Helix 71	AH8	D	229	243	Right-handed alpha
Helix 72	AH9	D	284	308	Right-handed alpha
Helix 73	AI1	D	325	335	Right-handed alpha
Helix 74	AI2	D	456	470	Right-handed alpha
Helix 75	AI3	D	492	500	Right-handed alpha
Helix 76	AI4	D	513	520	Right-handed alpha
Helix 77	AI5	D	665	670	Right-handed alpha
Helix 78	AI6	D	687	696	Right-handed alpha
Helix 79	AI7	D	696	703	Right-handed alpha
Helix 80	AI8	D	712	721	Right-handed alpha
Helix 81	AI9	D	730	737	Right-handed alpha
Helix 82	AJ1	D	768	784	Right-handed alpha
Helix 83	AJ2	D	784	794	Right-handed alpha

There are 29 sheets in PDB entry 8E98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	59	60	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	64	65	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	118	120	parallel
Strand 3	A	138	139	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	164	168	parallel
Strand 3	A	218	221	parallel
Strand 4	A	246	249	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	373	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	755	762	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	682	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	755	762	anti-parallel
Strand 3	A	534	543	anti-parallel
Strand 4	A	746	749	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	452	457	anti-parallel
Strand 3	A	434	437	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	32	36	parallel
Strand 3	B	93	96	parallel
Strand 4	B	119	120	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	164	169	parallel
Strand 3	B	223	227	parallel
Strand 4	B	251	254	parallel
Strand 5	B	273	277	parallel
Strand 6	B	359	363	anti-parallel
Strand 7	B	369	374	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	505	506	parallel
Strand 3	B	762	763	anti-parallel
Strand 4	B	521	522	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	417	first strand
Strand 2	B	451	456	anti-parallel
Strand 3	B	431	434	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	528	535	anti-parallel
Strand 3	B	754	758	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	26	33	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	164	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	248	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	352	357	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	453	456	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	496	499	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	528	first strand
Strand 2	C	762	763	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	756	757	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	732	first strand
Strand 2	C	538	543	anti-parallel
Strand 3	C	746	749	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	68	first strand
Strand 2	D	32	36	parallel
Strand 3	D	92	94	parallel
Strand 4	D	119	120	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	201	first strand
Strand 2	D	166	170	parallel
Strand 3	D	223	227	parallel
Strand 4	D	251	253	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	277	first strand
Strand 2	D	359	363	anti-parallel
Strand 3	D	369	376	anti-parallel
Strand 4	D	379	380	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	340	first strand
Strand 2	D	343	347	anti-parallel
Strand 3	D	353	354	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	417	first strand
Strand 2	D	451	455	anti-parallel
Strand 3	D	431	435	anti-parallel
Strand 4	D	472	477	parallel
Strand 5	D	402	407	parallel
Strand 6	D	505	506	parallel
Strand 7	D	762	763	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	487	first strand
Strand 2	D	490	491	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	534	first strand
Strand 2	D	726	728	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E98

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E98