Analysis of interatomic Contacts of Structural Units in PDB entry:
8E99

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E99 entry

There are 5 chains in PDB entry 8E99 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLU 797
B	ALA 33	HIS 801
C	LYS 25	TYR 795
D	THR 31	CYS 798
E	VAL 2	GLN 3

There are 85 helices in PDB entry 8E99. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	53	Right-handed alpha
Helix 2	AA2	A	71	85	Right-handed alpha
Helix 3	AA3	A	103	113	Right-handed alpha
Helix 4	AA4	A	143	158	Right-handed alpha
Helix 5	AA5	A	170	188	Right-handed alpha
Helix 6	AA6	A	205	212	Right-handed alpha
Helix 7	AA7	A	224	239	Right-handed alpha
Helix 8	AA8	A	256	261	Right-handed alpha
Helix 9	AA9	A	277	296	Right-handed alpha
Helix 10	AB1	A	317	327	Right-handed alpha
Helix 11	AB2	A	458	471	Right-handed alpha
Helix 12	AB3	A	500	507	Right-handed alpha
Helix 13	AB4	A	520	527	Right-handed alpha
Helix 14	AB5	A	669	674	Right-handed alpha
Helix 15	AB6	A	687	694	Right-handed alpha
Helix 16	AB7	A	696	698	Right-handed 310
Helix 17	AB8	A	699	709	Right-handed alpha
Helix 18	AB9	A	714	723	Right-handed alpha
Helix 19	AC1	A	733	743	Right-handed alpha
Helix 20	AC2	A	768	783	Right-handed alpha
Helix 21	AC3	A	783	794	Right-handed alpha
Helix 22	AC4	B	45	61	Right-handed alpha
Helix 23	AC5	B	78	94	Right-handed alpha
Helix 24	AC6	B	106	121	Right-handed alpha
Helix 25	AC7	B	128	133	Right-handed alpha
Helix 26	AC8	B	150	163	Right-handed alpha
Helix 27	AC9	B	179	192	Right-handed alpha
Helix 28	AD1	B	213	220	Right-handed alpha
Helix 29	AD2	B	232	247	Right-handed alpha
Helix 30	AD3	B	287	311	Right-handed alpha
Helix 31	AD4	B	325	329	Right-handed 310
Helix 32	AD5	B	334	339	Right-handed alpha
Helix 33	AD6	B	458	468	Right-handed alpha
Helix 34	AD7	B	495	502	Right-handed alpha
Helix 35	AD8	B	515	522	Right-handed alpha
Helix 36	AD9	B	667	672	Right-handed alpha
Helix 37	AE1	B	689	698	Right-handed alpha
Helix 38	AE2	B	699	708	Right-handed alpha
Helix 39	AE3	B	713	723	Right-handed alpha
Helix 40	AE4	B	732	741	Right-handed alpha
Helix 41	AE5	B	770	785	Right-handed alpha
Helix 42	AE6	B	787	796	Right-handed alpha
Helix 43	AE7	C	35	53	Right-handed alpha
Helix 44	AE8	C	70	84	Right-handed alpha
Helix 45	AE9	C	99	102	Right-handed 310
Helix 46	AF1	C	103	113	Right-handed alpha
Helix 47	AF2	C	126	130	Right-handed 310
Helix 48	AF3	C	143	145	Right-handed 310
Helix 49	AF4	C	146	158	Right-handed alpha
Helix 50	AF5	C	170	186	Right-handed alpha
Helix 51	AF6	C	204	214	Right-handed alpha
Helix 52	AF7	C	224	238	Right-handed alpha
Helix 53	AF8	C	253	261	Right-handed alpha
Helix 54	AF9	C	278	297	Right-handed alpha
Helix 55	AG1	C	317	327	Right-handed alpha
Helix 56	AG2	C	458	470	Right-handed alpha
Helix 57	AG3	C	500	508	Right-handed alpha
Helix 58	AG4	C	520	525	Right-handed alpha
Helix 59	AG5	C	669	674	Right-handed alpha
Helix 60	AG6	C	687	695	Right-handed alpha
Helix 61	AG7	C	698	707	Right-handed alpha
Helix 62	AG8	C	713	724	Right-handed alpha
Helix 63	AG9	C	733	743	Right-handed alpha
Helix 64	AH1	C	767	783	Right-handed alpha
Helix 65	AH2	C	783	793	Right-handed alpha
Helix 66	AH3	D	39	51	Right-handed alpha
Helix 67	AH4	D	73	89	Right-handed alpha
Helix 68	AH5	D	104	116	Right-handed alpha
Helix 69	AH6	D	145	160	Right-handed alpha
Helix 70	AH7	D	174	188	Right-handed alpha
Helix 71	AH8	D	209	217	Right-handed alpha
Helix 72	AH9	D	229	243	Right-handed alpha
Helix 73	AI1	D	284	308	Right-handed alpha
Helix 74	AI2	D	325	336	Right-handed alpha
Helix 75	AI3	D	456	470	Right-handed alpha
Helix 76	AI4	D	492	500	Right-handed alpha
Helix 77	AI5	D	513	518	Right-handed alpha
Helix 78	AI6	D	665	670	Right-handed alpha
Helix 79	AI7	D	686	696	Right-handed alpha
Helix 80	AI8	D	696	703	Right-handed alpha
Helix 81	AI9	D	712	721	Right-handed alpha
Helix 82	AJ1	D	730	737	Right-handed alpha
Helix 83	AJ2	D	767	784	Right-handed alpha
Helix 84	AJ3	D	784	794	Right-handed alpha
Helix 85	AJ4	E	86	90	Right-handed 310

There are 34 sheets in PDB entry 8E99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	59	63	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	118	120	parallel
Strand 3	A	137	139	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	164	167	parallel
Strand 3	A	218	221	parallel
Strand 4	A	246	249	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	373	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	399	402	parallel
Strand 3	A	512	513	parallel
Strand 4	A	761	762	anti-parallel
Strand 5	A	528	529	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	452	457	anti-parallel
Strand 3	A	434	437	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	732	first strand
Strand 2	A	534	543	anti-parallel
Strand 3	A	746	749	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	732	first strand
Strand 2	A	534	543	anti-parallel
Strand 3	A	755	758	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	70	71	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	124	126	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	171	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	378	anti-parallel
Strand 8	B	383	385	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	406	410	parallel
Strand 3	B	507	508	parallel
Strand 4	B	764	765	anti-parallel
Strand 5	B	523	524	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	456	457	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	452	453	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	731	first strand
Strand 2	B	529	537	anti-parallel
Strand 3	B	748	749	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	731	first strand
Strand 2	B	529	537	anti-parallel
Strand 3	B	756	761	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	26	33	parallel
Strand 3	C	65	66	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	26	33	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	164	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	249	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	352	355	anti-parallel
Strand 3	C	362	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	513	parallel
Strand 4	C	761	762	anti-parallel
Strand 5	C	528	529	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	488	first strand
Strand 2	C	497	499	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	756	758	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	32	37	parallel
Strand 3	D	92	94	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	201	first strand
Strand 2	D	166	170	parallel
Strand 3	D	223	227	parallel
Strand 4	D	251	253	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	278	first strand
Strand 2	D	358	363	anti-parallel
Strand 3	D	369	375	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	353	354	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	477	first strand
Strand 2	D	403	407	parallel
Strand 3	D	505	506	parallel
Strand 4	D	762	763	anti-parallel
Strand 5	D	521	522	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	417	first strand
Strand 2	D	451	455	anti-parallel
Strand 3	D	431	434	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	729	first strand
Strand 2	D	528	535	anti-parallel
Strand 3	D	754	758	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	112	117	parallel
Strand 3	E	91	96	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E99

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E99