Analysis of interatomic Contacts of Structural Units in PDB entry:
8E9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E9R entry

There are 2 chains in PDB entry 8E9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2LEU 396
B
 HIS -2ASN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8E9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
46 60Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
87 92Right-handed alpha
Helix 5
AA5
A
101 118Right-handed alpha
Helix 6
AA6
A
131 140Right-handed alpha
Helix 7
AA7
A
158 166Right-handed alpha
Helix 8
AA8
A
190 205Right-handed alpha
Helix 9
AA9
A
222 224Right-handed 310
Helix 10
AB1
A
225 233Right-handed alpha
Helix 11
AB2
A
250 254Right-handed 310
Helix 12
AB3
A
264 281Right-handed alpha
Helix 13
AB4
A
287 300Right-handed alpha
Helix 14
AB5
A
300 332Right-handed alpha
Helix 15
AB6
A
339 344Right-handed alpha
Helix 16
AB7
A
354 366Right-handed alpha
Helix 17
AB8
A
378 380Right-handed 310
Helix 18
AB9
A
384 396Right-handed alpha
Helix 19
AC1
B
13 23Right-handed alpha
Helix 20
AC2
B
46 60Right-handed alpha
Helix 21
AC3
B
71 84Right-handed alpha
Helix 22
AC4
B
87 92Right-handed alpha
Helix 23
AC5
B
101 118Right-handed alpha
Helix 24
AC6
B
131 140Right-handed alpha
Helix 25
AC7
B
158 167Right-handed alpha
Helix 26
AC8
B
190 205Right-handed alpha
Helix 27
AC9
B
222 224Right-handed 310
Helix 28
AD1
B
225 233Right-handed alpha
Helix 29
AD2
B
250 254Right-handed 310
Helix 30
AD3
B
264 281Right-handed alpha
Helix 31
AD4
B
287 300Right-handed alpha
Helix 32
AD5
B
300 332Right-handed alpha
Helix 33
AD6
B
338 344Right-handed 310
Helix 34
AD7
B
354 366Right-handed alpha
Helix 35
AD8
B
378 380Right-handed 310
Helix 36
AD9
B
384 396Right-handed alpha
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There are 8 sheets in PDB entry 8E9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
367 368parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
256 261anti-parallel
Strand 3
A
238 243anti-parallel
Strand 4
A
207 212parallel
Strand 5
A
174 178parallel
Strand 6
A
122 127parallel
Strand 7
A
143 148parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
156 157anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
374 376anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
367 368parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
256 261anti-parallel
Strand 3
B
238 243anti-parallel
Strand 4
B
207 212parallel
Strand 5
B
174 178parallel
Strand 6
B
122 127parallel
Strand 7
B
143 148parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
156 157anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
374 376anti-parallel
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