Analysis of interatomic Contacts of Structural Units in PDB entry:
8EB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EB0 entry

There are 4 chains in PDB entry 8EB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 512GLU 772
B
 MET 1LYS 146
C
 MET 1GLY 76
D
 MET 1LEU 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
523 525Right-handed 310
Helix 2
AA2
A
538 550Right-handed alpha
Helix 3
AA3
A
569 577Right-handed alpha
Helix 4
AA4
A
578 599Right-handed alpha
Helix 5
AA5
A
639 644Right-handed alpha
Helix 6
AA6
A
647 654Right-handed alpha
Helix 7
AA7
A
655 670Right-handed alpha
Helix 8
AA8
A
709 713Right-handed 310
Helix 9
AA9
A
736 758Right-handed alpha
Helix 10
AB1
B
2 17Right-handed alpha
Helix 11
AB2
B
87 91Right-handed 310
Helix 12
AB3
B
100 114Right-handed alpha
Helix 13
AB4
B
122 132Right-handed alpha
Helix 14
AB5
B
132 146Right-handed alpha
Helix 15
AB6
C
22 35Right-handed alpha
Helix 16
AB7
C
37 41Right-handed 310
Helix 17
AB8
C
55 60Right-handed 310
Helix 18
AB9
D
22 35Right-handed alpha
Helix 19
AC1
D
37 39Right-handed 310
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There are 9 sheets in PDB entry 8EB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
521 522anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
535 537anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 604first strand
Strand 2
A
611 613anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 622first strand
Strand 2
A
631 633anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 674first strand
Strand 2
A
681 684anti-parallel
Strand 3
C
71 73parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 692first strand
Strand 2
A
698 700anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
67 70anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 69parallel
Strand 4
C
43 44anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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