Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EBC entry

There are 4 chains in PDB entry 8EBC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	SER 370
B	ALA -1	SER 370
C	ALA 1	VAL 375
D	MET 0	LYS 294

There are 87 helices in PDB entry 8EBC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	12	Right-handed 310
Helix 2	AA2	A	26	30	Right-handed 310
Helix 3	AA3	A	63	74	Right-handed alpha
Helix 4	AA4	A	84	98	Right-handed alpha
Helix 5	AA5	A	133	144	Right-handed alpha
Helix 6	AA6	A	154	156	Right-handed 310
Helix 7	AA7	A	157	173	Right-handed alpha
Helix 8	AA8	A	185	194	Right-handed alpha
Helix 9	AA9	A	221	241	Right-handed alpha
Helix 10	AB1	A	254	265	Right-handed alpha
Helix 11	AB2	A	272	277	Right-handed alpha
Helix 12	AB3	A	301	306	Right-handed alpha
Helix 13	AB4	A	307	310	Right-handed 310
Helix 14	AB5	A	333	352	Right-handed alpha
Helix 15	AB6	A	356	364	Right-handed alpha
Helix 16	AB7	B	10	12	Right-handed 310
Helix 17	AB8	B	26	30	Right-handed 310
Helix 18	AB9	B	63	74	Right-handed alpha
Helix 19	AC1	B	84	97	Right-handed alpha
Helix 20	AC2	B	133	145	Right-handed alpha
Helix 21	AC3	B	154	156	Right-handed 310
Helix 22	AC4	B	157	173	Right-handed alpha
Helix 23	AC5	B	185	196	Right-handed alpha
Helix 24	AC6	B	222	241	Right-handed alpha
Helix 25	AC7	B	255	265	Right-handed alpha
Helix 26	AC8	B	272	277	Right-handed alpha
Helix 27	AC9	B	301	306	Right-handed alpha
Helix 28	AD1	B	307	311	Right-handed 310
Helix 29	AD2	B	333	352	Right-handed alpha
Helix 30	AD3	B	356	364	Right-handed alpha
Helix 31	AD4	C	10	12	Right-handed 310
Helix 32	AD5	C	26	30	Right-handed 310
Helix 33	AD6	C	63	73	Right-handed alpha
Helix 34	AD7	C	84	97	Right-handed alpha
Helix 35	AD8	C	133	145	Right-handed alpha
Helix 36	AD9	C	158	172	Right-handed alpha
Helix 37	AE1	C	185	194	Right-handed alpha
Helix 38	AE2	C	222	241	Right-handed alpha
Helix 39	AE3	C	254	265	Right-handed alpha
Helix 40	AE4	C	272	277	Right-handed alpha
Helix 41	AE5	C	301	306	Right-handed alpha
Helix 42	AE6	C	307	310	Right-handed 310
Helix 43	AE7	C	313	318	Right-handed 310
Helix 44	AE8	C	319	324	Right-handed alpha
Helix 45	AE9	C	333	352	Right-handed alpha
Helix 46	AF1	C	356	364	Right-handed alpha
Helix 47	AF2	D	10	12	Right-handed 310
Helix 48	AF3	D	26	30	Right-handed 310
Helix 49	AF4	D	63	73	Right-handed alpha
Helix 50	AF5	D	84	96	Right-handed alpha
Helix 51	AF6	D	133	145	Right-handed alpha
Helix 52	AF7	D	158	172	Right-handed alpha
Helix 53	AF8	D	185	195	Right-handed alpha
Helix 54	AF9	D	223	241	Right-handed alpha
Helix 55	AG1	D	254	264	Right-handed alpha
Helix 56	AG2	D	272	277	Right-handed alpha
Helix 57	AG3	D	301	306	Right-handed alpha
Helix 58	AG4	D	333	353	Right-handed alpha
Helix 59	AG5	D	356	364	Right-handed alpha
Helix 60	AG6	F	10	12	Right-handed 310
Helix 61	AG7	F	26	30	Right-handed 310
Helix 62	AG8	F	63	73	Right-handed alpha
Helix 63	AG9	F	84	97	Right-handed alpha
Helix 64	AH1	F	133	145	Right-handed alpha
Helix 65	AH2	F	154	156	Right-handed 310
Helix 66	AH3	F	157	173	Right-handed alpha
Helix 67	AH4	F	185	194	Right-handed alpha
Helix 68	AH5	F	222	241	Right-handed alpha
Helix 69	AH6	F	254	265	Right-handed alpha
Helix 70	AH7	F	272	277	Right-handed alpha
Helix 71	AH8	F	301	306	Right-handed alpha
Helix 72	AH9	F	307	310	Right-handed 310
Helix 73	AI1	F	333	352	Right-handed alpha
Helix 74	AI2	F	356	364	Right-handed alpha
Helix 75	AI3	E	10	12	Right-handed 310
Helix 76	AI4	E	26	30	Right-handed 310
Helix 77	AI5	E	63	73	Right-handed alpha
Helix 78	AI6	E	84	97	Right-handed alpha
Helix 79	AI7	E	133	144	Right-handed alpha
Helix 80	AI8	E	158	173	Right-handed alpha
Helix 81	AI9	E	185	195	Right-handed alpha
Helix 82	AJ1	E	223	241	Right-handed alpha
Helix 83	AJ2	E	254	264	Right-handed alpha
Helix 84	AJ3	E	301	306	Right-handed alpha
Helix 85	AJ4	E	307	310	Right-handed 310
Helix 86	AJ5	E	333	352	Right-handed alpha
Helix 87	AJ6	E	356	364	Right-handed alpha

There are 30 sheets in PDB entry 8EBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	374	first strand
Strand 2	A	0	3	anti-parallel
Strand 3	E	326	329	anti-parallel
Strand 4	E	291	296	anti-parallel
Strand 5	E	285	288	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	365	368	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	48	49	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	242	243	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	76	79	parallel
Strand 3	A	126	129	parallel
Strand 4	A	148	151	parallel
Strand 5	A	178	183	parallel
Strand 6	A	200	202	parallel
Strand 7	A	246	249	parallel
Strand 8	A	268	271	parallel
Strand 9	A	53	55	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	288	first strand
Strand 2	A	291	296	anti-parallel
Strand 3	A	326	329	anti-parallel
Strand 4	E	2	3	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	C	326	329	anti-parallel
Strand 3	C	291	296	anti-parallel
Strand 4	C	285	288	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	365	368	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	48	49	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	242	243	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	76	79	parallel
Strand 3	B	126	129	parallel
Strand 4	B	148	152	parallel
Strand 5	B	178	183	parallel
Strand 6	B	200	202	parallel
Strand 7	B	246	249	parallel
Strand 8	B	268	271	parallel
Strand 9	B	53	55	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	288	first strand
Strand 2	B	291	296	anti-parallel
Strand 3	B	326	329	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	365	368	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	48	49	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	242	243	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	76	79	parallel
Strand 3	C	126	129	parallel
Strand 4	C	148	151	parallel
Strand 5	C	178	183	parallel
Strand 6	C	200	202	parallel
Strand 7	C	246	249	parallel
Strand 8	C	268	271	parallel
Strand 9	C	53	55	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	F	326	329	anti-parallel
Strand 3	F	291	296	anti-parallel
Strand 4	F	285	288	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	365	368	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	48	49	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	242	243	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	76	79	parallel
Strand 3	D	126	129	parallel
Strand 4	D	148	151	parallel
Strand 5	D	177	183	parallel
Strand 6	D	200	202	parallel
Strand 7	D	246	249	parallel
Strand 8	D	268	271	parallel
Strand 9	D	53	55	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	288	first strand
Strand 2	D	291	296	anti-parallel
Strand 3	D	326	329	anti-parallel
Strand 4	F	2	3	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	365	368	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	48	49	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	40	first strand
Strand 2	F	242	243	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	76	79	parallel
Strand 3	F	126	129	parallel
Strand 4	F	148	151	parallel
Strand 5	F	178	183	parallel
Strand 6	F	200	202	parallel
Strand 7	F	246	249	parallel
Strand 8	F	268	271	parallel
Strand 9	F	53	55	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	365	368	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	48	49	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	242	243	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	76	79	parallel
Strand 3	E	126	129	parallel
Strand 4	E	148	151	parallel
Strand 5	E	178	183	parallel
Strand 6	E	200	203	parallel
Strand 7	E	246	249	parallel
Strand 8	E	268	271	parallel
Strand 9	E	53	55	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EBC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBC