Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EBF entry

There is 1 chain in PDB entry 8EBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 513ASP 1191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8EBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
513 530Right-handed alpha
Helix 2
AA2
A
536 557Right-handed alpha
Helix 3
AA3
A
560 574Right-handed alpha
Helix 4
AA4
A
576 585Right-handed alpha
Helix 5
AA5
A
599 603Right-handed 310
Helix 6
AA6
A
622 626Right-handed 310
Helix 7
AA7
A
654 662Right-handed alpha
Helix 8
AA8
A
667 679Right-handed alpha
Helix 9
AA9
A
682 687Right-handed alpha
Helix 10
AB1
A
688 691Right-handed 310
Helix 11
AB2
A
697 710Right-handed alpha
Helix 12
AB3
A
717 731Right-handed alpha
Helix 13
AB4
A
733 748Right-handed alpha
Helix 14
AB5
A
751 770Right-handed alpha
Helix 15
AB6
A
772 785Right-handed alpha
Helix 16
AB7
A
793 807Right-handed alpha
Helix 17
AB8
A
811 816Right-handed alpha
Helix 18
AB9
A
828 843Right-handed alpha
Helix 19
AC1
A
859 873Right-handed alpha
Helix 20
AC2
A
875 890Right-handed alpha
Helix 21
AC3
A
893 907Right-handed alpha
Helix 22
AC4
A
909 928Right-handed alpha
Helix 23
AC5
A
929 931Right-handed 310
Helix 24
AC6
A
936 942Right-handed alpha
Helix 25
AC7
A
945 961Right-handed alpha
Helix 26
AC8
A
991 1012Right-handed alpha
Helix 27
AC9
A
1017 1024Right-handed alpha
Helix 28
AD1
A
1028 1046Right-handed alpha
Helix 29
AD2
A
1048 1057Right-handed alpha
Helix 30
AD3
A
1060 1065Right-handed alpha
Helix 31
AD4
A
1067 1081Right-handed alpha
Helix 32
AD5
A
1083 1105Right-handed alpha
Helix 33
AD6
A
1112 1137Right-handed alpha
Helix 34
AD7
A
1138 1156Right-handed alpha
Helix 35
AD8
A
1160 1170Right-handed alpha
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There are 2 sheets in PDB entry 8EBF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 589first strand
Strand 2
A
647 653anti-parallel
Strand 3
A
639 641anti-parallel
Strand 4
A
614 615anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 846first strand
Strand 2
A
853 855anti-parallel
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