Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EBG entry

There are 2 chains in PDB entry 8EBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17PRO 336
B
 PRO 15ILE 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8EBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
75 85Right-handed alpha
Helix 3
AA3
A
87 89Right-handed 310
Helix 4
AA4
A
108 113Right-handed alpha
Helix 5
AA5
A
124 131Right-handed alpha
Helix 6
AA6
A
146 154Right-handed alpha
Helix 7
AA7
A
165 177Right-handed alpha
Helix 8
AA8
A
179 201Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
225 235Right-handed alpha
Helix 11
AB2
A
239 243Right-handed 310
Helix 12
AB3
A
255 260Right-handed alpha
Helix 13
AB4
A
265 269Right-handed 310
Helix 14
AB5
A
279 292Right-handed alpha
Helix 15
AB6
A
292 297Right-handed alpha
Helix 16
AB7
A
298 303Right-handed alpha
Helix 17
AB8
A
310 315Right-handed alpha
Helix 18
AB9
A
319 331Right-handed alpha
Helix 19
AC1
A
332 335Right-handed 310
Helix 20
AC2
B
30 34Right-handed 310
Helix 21
AC3
B
75 85Right-handed alpha
Helix 22
AC4
B
87 89Right-handed 310
Helix 23
AC5
B
108 113Right-handed alpha
Helix 24
AC6
B
124 131Right-handed alpha
Helix 25
AC7
B
146 152Right-handed alpha
Helix 26
AC8
B
165 177Right-handed alpha
Helix 27
AC9
B
179 201Right-handed alpha
Helix 28
AD1
B
202 206Right-handed 310
Helix 29
AD2
B
225 235Right-handed alpha
Helix 30
AD3
B
239 243Right-handed 310
Helix 31
AD4
B
255 261Right-handed alpha
Helix 32
AD5
B
265 269Right-handed 310
Helix 33
AD6
B
279 292Right-handed alpha
Helix 34
AD7
B
292 297Right-handed alpha
Helix 35
AD8
B
298 303Right-handed alpha
Helix 36
AD9
B
310 315Right-handed alpha
Helix 37
AE1
B
319 331Right-handed alpha
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There are 6 sheets in PDB entry 8EBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
22 24anti-parallel
Strand 3
A
306 309parallel
Strand 4
A
272 277parallel
Strand 5
A
208 213parallel
Strand 6
A
217 221anti-parallel
Strand 7
A
249 253anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
61 65anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
71 73parallel
Strand 3
A
135 139parallel
Strand 4
A
156 159parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
306 308parallel
Strand 3
B
272 277parallel
Strand 4
B
208 213parallel
Strand 5
B
217 221anti-parallel
Strand 6
B
249 253anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
61 65anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
91 96parallel
Strand 3
B
71 73parallel
Strand 4
B
135 139parallel
Strand 5
B
156 159parallel
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