Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EBL entry

There are 4 chains in PDB entry 8EBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 25	VAL 359
B	ALA 27	VAL 359
D	ASN 1049	GLY 1055
C	ASN 1049	GLY 1055

There are 6 helices in PDB entry 8EBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	180	185	Right-handed alpha
Helix 2	AA2	A	344	348	Right-handed 310
Helix 3	AA3	B	180	185	Right-handed alpha
Helix 4	AA4	B	344	348	Right-handed 310
Helix 5	AA5	D	1049	1053	Right-handed 310
Helix 6	AA6	C	1049	1053	Right-handed 310

There are 18 sheets in PDB entry 8EBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	78	82	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	58	62	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	131	135	parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	102	106	anti-parallel
Strand 5	A	95	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	113	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	163	164	anti-parallel
Strand 3	A	190	192	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	156	160	anti-parallel
Strand 3	A	195	199	anti-parallel
Strand 4	A	204	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	240	249	anti-parallel
Strand 4	A	255	258	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	280	284	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	306	310	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	354	358	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	43	47	anti-parallel
Strand 3	B	67	72	anti-parallel
Strand 4	B	78	82	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	58	62	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	131	135	parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	102	106	anti-parallel
Strand 5	B	95	99	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	113	114	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	156	164	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	156	164	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	204	206	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	226	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	240	249	anti-parallel
Strand 4	B	255	258	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	275	first strand
Strand 2	B	280	284	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	306	310	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	354	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBL