Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EBN entry

There are 6 chains in PDB entry 8EBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27SER 406
B
 ALA 27SER 406
C
 MET 1PRO 97
D
 MET 17CYS 112
E
 MET 1LEU 99
F
 MET 17CYS 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8EBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
180 185Right-handed alpha
Helix 2
AA2
A
363 375Right-handed alpha
Helix 3
AA3
A
393 397Right-handed alpha
Helix 4
AA4
B
344 348Right-handed 310
Helix 5
AA5
B
363 375Right-handed alpha
Helix 6
AA6
B
375 381Right-handed alpha
Helix 7
AA7
B
387 399Right-handed alpha
Helix 8
AA8
C
23 36Right-handed alpha
Helix 9
AA9
C
38 42Right-handed 310
Helix 10
AB1
C
57 61Right-handed 310
Helix 11
AB2
D
33 37Right-handed alpha
Helix 12
AB3
D
39 47Right-handed alpha
Helix 13
AB4
D
66 83Right-handed alpha
Helix 14
AB5
D
96 98Right-handed 310
Helix 15
AB6
D
99 111Right-handed alpha
Helix 16
AB7
E
23 36Right-handed alpha
Helix 17
AB8
E
38 40Right-handed 310
Helix 18
AB9
E
56 61Right-handed alpha
Helix 19
AC1
F
33 37Right-handed alpha
Helix 20
AC2
F
39 48Right-handed alpha
Helix 21
AC3
F
66 84Right-handed alpha
Helix 22
AC4
F
96 111Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 8EBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
77 85anti-parallel
Strand 5
A
130 134parallel
Strand 6
A
118 122anti-parallel
Strand 7
A
102 106anti-parallel
Strand 8
A
95 99anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
156 164anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
175 177anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 164anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
204 206anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
229 233anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
297 301anti-parallel
Strand 4
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
331 335anti-parallel
Strand 3
A
354 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
78 82anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
131 134parallel
Strand 3
B
114 121anti-parallel
Strand 4
B
102 109anti-parallel
Strand 5
B
95 99anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
204 206parallel
Strand 3
B
197 199anti-parallel
Strand 4
B
156 160anti-parallel
Strand 5
B
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
229 233anti-parallel
Strand 3
B
245 249anti-parallel
Strand 4
B
254 258anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
280 284anti-parallel
Strand 3
B
297 301anti-parallel
Strand 4
B
306 310anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
331 335anti-parallel
Strand 3
B
354 358anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
44 46anti-parallel
Strand 3
C
73 77anti-parallel
Strand 4
C
2 8parallel
Strand 5
C
12 19anti-parallel
Strand 6
D
28 32parallel
Strand 7
D
18 22anti-parallel
Strand 8
D
59 61parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 45first strand
Strand 2
E
73 79anti-parallel
Strand 3
E
2 8parallel
Strand 4
E
12 19anti-parallel
Strand 5
F
28 32parallel
Strand 6
F
18 22anti-parallel
Strand 7
F
59 61parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il