Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EBP entry

There are 6 chains in PDB entry 8EBP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	GLU 453
L	GLN 1	SER 213
H	GLN 1	CYS 216
B	LEU 19	GLU 453
M	GLN 1	SER 213
I	GLN 1	CYS 216

There are 32 helices in PDB entry 8EBP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	92	Right-handed alpha
Helix 2	AA2	A	100	106	Right-handed alpha
Helix 3	AA3	A	111	113	Right-handed 310
Helix 4	AA4	A	114	129	Right-handed alpha
Helix 5	AA5	A	133	141	Right-handed alpha
Helix 6	AA6	A	165	174	Right-handed alpha
Helix 7	AA7	A	187	210	Right-handed alpha
Helix 8	AA8	A	223	232	Right-handed alpha
Helix 9	AA9	A	239	245	Right-handed alpha
Helix 10	AB1	A	247	254	Right-handed alpha
Helix 11	AB2	A	322	326	Right-handed 310
Helix 12	AB3	A	344	347	Right-handed 310
Helix 13	AB4	A	348	353	Right-handed alpha
Helix 14	AB5	L	182	189	Right-handed alpha
Helix 15	AB6	H	28	32	Right-handed 310
Helix 16	AB7	H	83	87	Right-handed 310
Helix 17	AB8	B	65	92	Right-handed alpha
Helix 18	AB9	B	114	129	Right-handed alpha
Helix 19	AC1	B	133	141	Right-handed alpha
Helix 20	AC2	B	164	173	Right-handed alpha
Helix 21	AC3	B	187	211	Right-handed alpha
Helix 22	AC4	B	224	232	Right-handed alpha
Helix 23	AC5	B	237	246	Right-handed alpha
Helix 24	AC6	B	247	253	Right-handed alpha
Helix 25	AC7	B	322	326	Right-handed 310
Helix 26	AC8	B	344	347	Right-handed 310
Helix 27	AC9	B	348	353	Right-handed alpha
Helix 28	AD1	M	122	128	Right-handed alpha
Helix 29	AD2	M	182	189	Right-handed alpha
Helix 30	AD3	I	28	32	Right-handed 310
Helix 31	AD4	I	61	64	Right-handed 310
Helix 32	AD5	I	83	87	Right-handed 310

There are 36 sheets in PDB entry 8EBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	318	320	anti-parallel
Strand 3	A	308	311	anti-parallel
Strand 4	A	283	288	anti-parallel
Strand 5	A	29	35	anti-parallel
Strand 6	A	20	24	anti-parallel
Strand 7	A	433	437	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	38	40	anti-parallel
Strand 3	A	334	336	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	156	160	anti-parallel
Strand 3	A	46	51	parallel
Strand 4	A	266	271	anti-parallel
Strand 5	A	257	262	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	364	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	379	383	anti-parallel
Strand 3	A	410	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	390	393	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	423	426	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	145	151	anti-parallel
Strand 3	L	195	198	anti-parallel
Strand 4	L	201	203	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	192	193	first strand
Strand 2	L	206	207	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	97	first strand
Strand 2	H	100	100	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	136	143	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	136	143	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	195	198	anti-parallel
Strand 3	H	207	210	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	317	320	anti-parallel
Strand 3	B	308	312	anti-parallel
Strand 4	B	283	288	anti-parallel
Strand 5	B	29	35	anti-parallel
Strand 6	B	20	24	anti-parallel
Strand 7	B	433	437	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	38	40	anti-parallel
Strand 3	B	334	336	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	44	49	parallel
Strand 4	B	267	273	anti-parallel
Strand 5	B	257	262	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	364	366	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	410	411	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	391	393	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	423	426	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	92	anti-parallel
Strand 4	M	34	38	anti-parallel
Strand 5	M	45	48	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	92	anti-parallel
Strand 4	M	95	98	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	24	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	62	67	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	115	119	first strand
Strand 2	M	131	140	anti-parallel
Strand 3	M	173	181	anti-parallel
Strand 4	M	166	167	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	145	148	first strand
Strand 2	M	192	198	anti-parallel
Strand 3	M	201	207	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	150	151	first strand
Strand 2	M	154	155	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	97	first strand
Strand 2	I	100	100	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	136	143	anti-parallel
Strand 3	I	176	184	anti-parallel
Strand 4	I	163	165	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	136	143	anti-parallel
Strand 3	I	176	184	anti-parallel
Strand 4	I	169	170	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	195	198	first strand
Strand 2	I	207	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EBP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBP