Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EBV entry

There are 13 chains in PDB entry 8EBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 52	ASP 723
B	MET 1	LEU 760
C	LEU 111	THR 548
D	ARG 17	SER 462
E	ARG 10	HIS 387
F	ASP 6	SER 292
G	VAL 2	LEU 68
H	ILE 167	ASP 910
I	SER 271	PRO 331
J	GLU 24	TYR 172
L	A 1	T 29
L	T 32	A 53
M	T 4	T 56

There are170 helices in PDB entry 8EBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	104	Right-handed alpha
Helix 2	AA2	A	119	130	Right-handed alpha
Helix 3	AA3	A	132	144	Right-handed alpha
Helix 4	AA4	A	149	163	Right-handed alpha
Helix 5	AA5	A	181	190	Right-handed alpha
Helix 6	AA6	A	191	198	Right-handed alpha
Helix 7	AA7	A	273	275	Right-handed 310
Helix 8	AA8	A	276	288	Right-handed alpha
Helix 9	AA9	A	317	327	Right-handed alpha
Helix 10	AB1	A	345	358	Right-handed alpha
Helix 11	AB2	A	367	382	Right-handed alpha
Helix 12	AB3	A	385	387	Right-handed 310
Helix 13	AB4	A	410	414	Right-handed alpha
Helix 14	AB5	A	420	433	Right-handed alpha
Helix 15	AB6	A	443	446	Right-handed 310
Helix 16	AB7	A	448	458	Right-handed alpha
Helix 17	AB8	A	479	484	Right-handed alpha
Helix 18	AB9	A	492	499	Right-handed alpha
Helix 19	AC1	A	515	525	Right-handed alpha
Helix 20	AC2	A	529	536	Right-handed alpha
Helix 21	AC3	A	537	554	Right-handed alpha
Helix 22	AC4	A	564	576	Right-handed alpha
Helix 23	AC5	A	585	599	Right-handed alpha
Helix 24	AC6	A	609	612	Right-handed 310
Helix 25	AC7	A	634	644	Right-handed alpha
Helix 26	AC8	A	667	683	Right-handed alpha
Helix 27	AC9	A	705	719	Right-handed alpha
Helix 28	AD1	B	18	33	Right-handed alpha
Helix 29	AD2	B	47	63	Right-handed alpha
Helix 30	AD3	B	76	99	Right-handed alpha
Helix 31	AD4	B	111	115	Right-handed 310
Helix 32	AD5	B	126	138	Right-handed alpha
Helix 33	AD6	B	139	149	Right-handed alpha
Helix 34	AD7	B	155	164	Right-handed alpha
Helix 35	AD8	B	176	188	Right-handed alpha
Helix 36	AD9	B	190	198	Right-handed alpha
Helix 37	AE1	B	209	214	Right-handed alpha
Helix 38	AE2	B	214	223	Right-handed alpha
Helix 39	AE3	B	238	248	Right-handed alpha
Helix 40	AE4	B	252	277	Right-handed alpha
Helix 41	AE5	B	278	291	Right-handed alpha
Helix 42	AE6	B	292	299	Right-handed alpha
Helix 43	AE7	B	300	306	Right-handed 310
Helix 44	AE8	B	311	317	Right-handed alpha
Helix 45	AE9	B	325	345	Right-handed alpha
Helix 46	AF1	B	353	366	Right-handed alpha
Helix 47	AF2	B	368	374	Right-handed alpha
Helix 48	AF3	B	374	386	Right-handed alpha
Helix 49	AF4	B	390	393	Right-handed 310
Helix 50	AF5	B	394	410	Right-handed alpha
Helix 51	AF6	B	440	451	Right-handed alpha
Helix 52	AF7	B	465	472	Right-handed alpha
Helix 53	AF8	B	507	512	Right-handed alpha
Helix 54	AF9	B	513	531	Right-handed alpha
Helix 55	AG1	B	541	556	Right-handed alpha
Helix 56	AG2	B	556	565	Right-handed alpha
Helix 57	AG3	B	573	590	Right-handed alpha
Helix 58	AG4	B	603	608	Right-handed alpha
Helix 59	AG5	B	630	645	Right-handed alpha
Helix 60	AG6	B	647	665	Right-handed alpha
Helix 61	AG7	B	666	668	Right-handed 310
Helix 62	AG8	B	682	685	Right-handed 310
Helix 63	AG9	B	686	691	Right-handed alpha
Helix 64	AH1	B	694	699	Right-handed alpha
Helix 65	AH2	B	702	706	Right-handed 310
Helix 66	AH3	B	709	725	Right-handed alpha
Helix 67	AH4	B	729	734	Right-handed 310
Helix 68	AH5	B	740	746	Right-handed alpha
Helix 69	AH6	B	746	756	Right-handed alpha
Helix 70	AH7	C	112	121	Right-handed alpha
Helix 71	AH8	C	121	133	Right-handed alpha
Helix 72	AH9	C	138	147	Right-handed alpha
Helix 73	AI1	C	168	173	Right-handed alpha
Helix 74	AI2	C	189	200	Right-handed alpha
Helix 75	AI3	C	200	211	Right-handed alpha
Helix 76	AI4	C	216	227	Right-handed alpha
Helix 77	AI5	C	297	320	Right-handed alpha
Helix 78	AI6	C	379	384	Right-handed alpha
Helix 79	AI7	C	398	411	Right-handed alpha
Helix 80	AI8	C	418	422	Right-handed 310
Helix 81	AI9	C	423	435	Right-handed alpha
Helix 82	AJ1	C	448	453	Right-handed alpha
Helix 83	AJ2	C	454	479	Right-handed alpha
Helix 84	AJ3	C	483	504	Right-handed alpha
Helix 85	AJ4	C	504	516	Right-handed alpha
Helix 86	AJ5	C	520	547	Right-handed alpha
Helix 87	AJ6	D	18	25	Right-handed alpha
Helix 88	AJ7	D	27	36	Right-handed alpha
Helix 89	AJ8	D	37	48	Right-handed alpha
Helix 90	AJ9	D	49	59	Right-handed alpha
Helix 91	AK1	D	68	73	Right-handed alpha
Helix 92	AK2	D	79	93	Right-handed alpha
Helix 93	AK3	D	111	124	Right-handed alpha
Helix 94	AK4	D	132	137	Right-handed 310
Helix 95	AK5	D	144	165	Right-handed alpha
Helix 96	AK6	D	172	183	Right-handed alpha
Helix 97	AK7	D	197	206	Right-handed alpha
Helix 98	AK8	D	207	222	Right-handed alpha
Helix 99	AK9	D	223	227	Right-handed 310
Helix 100	AL1	D	229	242	Right-handed alpha
Helix 101	AL2	D	255	268	Right-handed alpha
Helix 102	AL3	D	284	291	Right-handed alpha
Helix 103	AL4	D	321	330	Right-handed alpha
Helix 104	AL5	D	347	357	Right-handed alpha
Helix 105	AL6	D	360	371	Right-handed alpha
Helix 106	AL7	D	373	378	Right-handed alpha
Helix 107	AL8	D	384	399	Right-handed alpha
Helix 108	AL9	D	414	429	Right-handed alpha
Helix 109	AM1	D	444	462	Right-handed alpha
Helix 110	AM2	E	10	14	Right-handed 310
Helix 111	AM3	E	68	73	Right-handed 310
Helix 112	AM4	E	79	99	Right-handed alpha
Helix 113	AM5	E	123	136	Right-handed alpha
Helix 114	AM6	E	144	158	Right-handed alpha
Helix 115	AM7	E	181	193	Right-handed alpha
Helix 116	AM8	E	205	216	Right-handed alpha
Helix 117	AM9	E	224	237	Right-handed alpha
Helix 118	AN1	E	272	277	Right-handed alpha
Helix 119	AN2	E	314	320	Right-handed alpha
Helix 120	AN3	E	321	326	Right-handed alpha
Helix 121	AN4	E	368	378	Right-handed alpha
Helix 122	AN5	E	382	387	Right-handed alpha
Helix 123	AN6	F	18	28	Right-handed alpha
Helix 124	AN7	F	33	52	Right-handed alpha
Helix 125	AN8	F	101	121	Right-handed alpha
Helix 126	AN9	F	132	151	Right-handed alpha
Helix 127	AO1	F	173	188	Right-handed alpha
Helix 128	AO2	F	200	211	Right-handed alpha
Helix 129	AO3	F	219	221	Right-handed 310
Helix 130	AO4	F	222	230	Right-handed alpha
Helix 131	AO5	F	234	241	Right-handed alpha
Helix 132	AO6	G	13	27	Right-handed alpha
Helix 133	AO7	G	46	64	Right-handed alpha
Helix 134	AO8	H	169	224	Right-handed alpha
Helix 135	AO9	H	226	237	Right-handed alpha
Helix 136	AP1	H	238	243	Right-handed alpha
Helix 137	AP2	H	245	249	Right-handed 310
Helix 138	AP3	H	250	265	Right-handed alpha
Helix 139	AP4	H	278	290	Right-handed alpha
Helix 140	AP5	H	294	309	Right-handed alpha
Helix 141	AP6	H	554	561	Right-handed alpha
Helix 142	AP7	H	581	586	Right-handed alpha
Helix 143	AP8	H	593	597	Right-handed 310
Helix 144	AP9	H	599	608	Right-handed alpha
Helix 145	AQ1	H	614	630	Right-handed alpha
Helix 146	AQ2	H	637	642	Right-handed alpha
Helix 147	AQ3	H	677	679	Right-handed 310
Helix 148	AQ4	H	687	693	Right-handed alpha
Helix 149	AQ5	H	712	721	Right-handed alpha
Helix 150	AQ6	H	722	725	Right-handed 310
Helix 151	AQ7	H	734	738	Right-handed 310
Helix 152	AQ8	H	763	767	Right-handed 310
Helix 153	AQ9	H	778	786	Right-handed alpha
Helix 154	AR1	H	799	803	Right-handed 310
Helix 155	AR2	H	817	835	Right-handed alpha
Helix 156	AR3	H	836	866	Right-handed alpha
Helix 157	AR4	H	898	902	Right-handed alpha
Helix 158	AR5	I	275	281	Right-handed alpha
Helix 159	AR6	I	282	294	Right-handed alpha
Helix 160	AR7	I	295	297	Right-handed 310
Helix 161	AR8	I	298	309	Right-handed alpha
Helix 162	AR9	I	310	317	Right-handed alpha
Helix 163	AS1	I	320	329	Right-handed alpha
Helix 164	AS2	J	28	40	Right-handed alpha
Helix 165	AS3	J	52	60	Right-handed alpha
Helix 166	AS4	J	65	77	Right-handed alpha
Helix 167	AS5	J	85	114	Right-handed alpha
Helix 168	AS6	J	122	134	Right-handed alpha
Helix 169	AS7	J	138	149	Right-handed alpha
Helix 170	AS8	J	158	168	Right-handed alpha

There are 29 sheets in PDB entry 8EBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	D	333	337	parallel
Strand 3	D	342	345	anti-parallel
Strand 4	D	314	317	anti-parallel
Strand 5	D	307	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	105	108	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	174	179	anti-parallel
Strand 3	A	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	405	409	parallel
Strand 3	A	361	365	parallel
Strand 4	A	435	441	parallel
Strand 5	A	460	467	parallel
Strand 6	A	336	339	parallel
Strand 7	A	487	490	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	604	607	parallel
Strand 3	A	558	561	parallel
Strand 4	A	622	625	parallel
Strand 5	A	657	664	parallel
Strand 6	A	505	512	parallel
Strand 7	A	688	690	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	8	11	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	204	208	parallel
Strand 3	B	70	74	parallel
Strand 4	B	230	234	parallel
Strand 5	B	453	458	parallel
Strand 6	B	38	41	parallel
Strand 7	B	477	481	parallel
Strand 8	B	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	429	437	anti-parallel
Strand 3	B	414	421	anti-parallel
Strand 4	B	350	352	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	494	first strand
Strand 2	B	675	679	parallel
Strand 3	B	617	620	parallel
Strand 4	B	535	539	parallel
Strand 5	B	594	599	parallel
Strand 6	B	566	569	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	96	100	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	195	196	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	271	272	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	435	first strand
Strand 2	D	440	443	anti-parallel
Strand 3	D	402	409	anti-parallel
Strand 4	G	6	11	anti-parallel
Strand 5	G	42	45	anti-parallel
Strand 6	G	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	121	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	59	66	parallel
Strand 4	E	164	171	parallel
Strand 5	E	194	200	parallel
Strand 6	E	219	221	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	311	312	anti-parallel
Strand 3	E	249	253	parallel
Strand 4	F	264	268	anti-parallel
Strand 5	F	274	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	288	290	anti-parallel
Strand 3	E	297	298	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	284	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	335	first strand
Strand 2	E	356	359	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	7	16	parallel
Strand 4	F	156	165	parallel
Strand 5	F	190	195	parallel
Strand 6	F	214	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	254	first strand
Strand 2	F	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	291	292	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	551	552	first strand
Strand 2	H	541	546	anti-parallel
Strand 3	H	531	536	anti-parallel
Strand 4	H	313	318	anti-parallel
Strand 5	H	569	573	anti-parallel
Strand 6	H	578	580	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	657	659	first strand
Strand 2	H	681	683	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	669	670	first strand
Strand 2	H	673	674	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	685	686	first strand
Strand 2	H	730	733	anti-parallel
Strand 3	H	705	707	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	759	760	first strand
Strand 2	H	791	798	parallel
Strand 3	H	805	814	anti-parallel
Strand 4	H	771	774	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	83	84	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBV