Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EBY entry

There are 11 chains in PDB entry 8EBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 52	LEU 722
B	MET 1	ARG 730
C	LEU 111	THR 548
D	ARG 17	SER 462
E	THR 8	HIS 387
F	ASP 6	PHE 289
G	VAL 4	THR 69
H	GLY 889	LEU 940
K	TYR 102	MET 273
L	A 1	T 23
M	G 35	T 56

There are127 helices in PDB entry 8EBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	104	Right-handed alpha
Helix 2	AA2	A	119	129	Right-handed alpha
Helix 3	AA3	A	132	143	Right-handed alpha
Helix 4	AA4	A	152	162	Right-handed alpha
Helix 5	AA5	A	181	190	Right-handed alpha
Helix 6	AA6	A	191	196	Right-handed alpha
Helix 7	AA7	A	273	275	Right-handed 310
Helix 8	AA8	A	276	287	Right-handed alpha
Helix 9	AA9	A	317	328	Right-handed alpha
Helix 10	AB1	A	346	358	Right-handed alpha
Helix 11	AB2	A	369	382	Right-handed alpha
Helix 12	AB3	A	420	431	Right-handed alpha
Helix 13	AB4	A	443	446	Right-handed 310
Helix 14	AB5	A	451	458	Right-handed alpha
Helix 15	AB6	A	476	484	Right-handed alpha
Helix 16	AB7	A	492	499	Right-handed alpha
Helix 17	AB8	A	515	525	Right-handed alpha
Helix 18	AB9	A	530	536	Right-handed alpha
Helix 19	AC1	A	537	554	Right-handed alpha
Helix 20	AC2	A	564	574	Right-handed alpha
Helix 21	AC3	A	586	598	Right-handed alpha
Helix 22	AC4	A	632	642	Right-handed alpha
Helix 23	AC5	A	667	677	Right-handed alpha
Helix 24	AC6	A	677	684	Right-handed alpha
Helix 25	AC7	A	705	718	Right-handed alpha
Helix 26	AC8	B	18	35	Right-handed alpha
Helix 27	AC9	B	47	63	Right-handed alpha
Helix 28	AD1	B	76	99	Right-handed alpha
Helix 29	AD2	B	129	138	Right-handed alpha
Helix 30	AD3	B	139	146	Right-handed alpha
Helix 31	AD4	B	156	165	Right-handed alpha
Helix 32	AD5	B	176	188	Right-handed alpha
Helix 33	AD6	B	190	199	Right-handed alpha
Helix 34	AD7	B	209	214	Right-handed alpha
Helix 35	AD8	B	214	222	Right-handed alpha
Helix 36	AD9	B	238	247	Right-handed alpha
Helix 37	AE1	B	252	271	Right-handed alpha
Helix 38	AE2	B	327	335	Right-handed alpha
Helix 39	AE3	B	335	346	Right-handed alpha
Helix 40	AE4	B	355	365	Right-handed alpha
Helix 41	AE5	B	369	374	Right-handed alpha
Helix 42	AE6	B	374	380	Right-handed alpha
Helix 43	AE7	B	381	387	Right-handed alpha
Helix 44	AE8	B	394	410	Right-handed alpha
Helix 45	AE9	B	440	449	Right-handed alpha
Helix 46	AF1	B	466	471	Right-handed alpha
Helix 47	AF2	B	507	511	Right-handed 310
Helix 48	AF3	B	513	529	Right-handed alpha
Helix 49	AF4	B	541	555	Right-handed alpha
Helix 50	AF5	B	557	565	Right-handed alpha
Helix 51	AF6	B	573	590	Right-handed alpha
Helix 52	AF7	B	602	608	Right-handed alpha
Helix 53	AF8	B	632	644	Right-handed alpha
Helix 54	AF9	B	647	665	Right-handed alpha
Helix 55	AG1	B	666	668	Right-handed 310
Helix 56	AG2	B	682	685	Right-handed 310
Helix 57	AG3	B	686	691	Right-handed alpha
Helix 58	AG4	B	694	699	Right-handed alpha
Helix 59	AG5	B	709	725	Right-handed alpha
Helix 60	AG6	C	112	121	Right-handed alpha
Helix 61	AG7	C	121	133	Right-handed alpha
Helix 62	AG8	C	138	147	Right-handed alpha
Helix 63	AG9	C	398	413	Right-handed alpha
Helix 64	AH1	C	418	422	Right-handed 310
Helix 65	AH2	C	423	435	Right-handed alpha
Helix 66	AH3	C	454	479	Right-handed alpha
Helix 67	AH4	C	483	516	Right-handed alpha
Helix 68	AH5	C	520	547	Right-handed alpha
Helix 69	AH6	D	18	25	Right-handed alpha
Helix 70	AH7	D	27	35	Right-handed alpha
Helix 71	AH8	D	37	47	Right-handed alpha
Helix 72	AH9	D	49	59	Right-handed alpha
Helix 73	AI1	D	60	62	Right-handed 310
Helix 74	AI2	D	68	73	Right-handed alpha
Helix 75	AI3	D	79	94	Right-handed alpha
Helix 76	AI4	D	111	123	Right-handed alpha
Helix 77	AI5	D	144	165	Right-handed alpha
Helix 78	AI6	D	172	182	Right-handed alpha
Helix 79	AI7	D	197	206	Right-handed alpha
Helix 80	AI8	D	207	223	Right-handed alpha
Helix 81	AI9	D	224	226	Right-handed 310
Helix 82	AJ1	D	229	242	Right-handed alpha
Helix 83	AJ2	D	255	269	Right-handed alpha
Helix 84	AJ3	D	284	290	Right-handed alpha
Helix 85	AJ4	D	321	331	Right-handed alpha
Helix 86	AJ5	D	347	357	Right-handed alpha
Helix 87	AJ6	D	360	371	Right-handed alpha
Helix 88	AJ7	D	373	379	Right-handed 310
Helix 89	AJ8	D	384	399	Right-handed alpha
Helix 90	AJ9	D	414	429	Right-handed alpha
Helix 91	AK1	D	444	462	Right-handed alpha
Helix 92	AK2	E	17	22	Right-handed 310
Helix 93	AK3	E	29	42	Right-handed alpha
Helix 94	AK4	E	68	73	Right-handed 310
Helix 95	AK5	E	79	99	Right-handed alpha
Helix 96	AK6	E	123	135	Right-handed alpha
Helix 97	AK7	E	144	157	Right-handed alpha
Helix 98	AK8	E	181	193	Right-handed alpha
Helix 99	AK9	E	205	216	Right-handed alpha
Helix 100	AL1	E	224	237	Right-handed alpha
Helix 101	AL2	E	272	277	Right-handed alpha
Helix 102	AL3	E	314	320	Right-handed alpha
Helix 103	AL4	E	321	326	Right-handed alpha
Helix 104	AL5	E	368	378	Right-handed alpha
Helix 105	AL6	E	382	387	Right-handed alpha
Helix 106	AL7	F	18	28	Right-handed alpha
Helix 107	AL8	F	33	52	Right-handed alpha
Helix 108	AL9	F	101	121	Right-handed alpha
Helix 109	AM1	F	132	151	Right-handed alpha
Helix 110	AM2	F	173	187	Right-handed alpha
Helix 111	AM3	F	200	211	Right-handed alpha
Helix 112	AM4	F	219	221	Right-handed 310
Helix 113	AM5	F	222	230	Right-handed alpha
Helix 114	AM6	F	234	241	Right-handed alpha
Helix 115	AM7	F	282	288	Right-handed alpha
Helix 116	AM8	G	13	27	Right-handed alpha
Helix 117	AM9	G	46	48	Right-handed 310
Helix 118	AN1	G	49	64	Right-handed alpha
Helix 119	AN2	H	890	902	Right-handed alpha
Helix 120	AN3	H	908	915	Right-handed alpha
Helix 121	AN4	H	923	934	Right-handed alpha
Helix 122	AN5	H	935	939	Right-handed 310
Helix 123	AN6	K	115	122	Right-handed alpha
Helix 124	AN7	K	141	149	Right-handed alpha
Helix 125	AN8	K	151	157	Right-handed alpha
Helix 126	AN9	K	183	195	Right-handed alpha
Helix 127	AO1	K	199	232	Right-handed alpha

There are 24 sheets in PDB entry 8EBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	D	333	338	parallel
Strand 3	D	341	345	anti-parallel
Strand 4	D	314	317	anti-parallel
Strand 5	D	307	310	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	84	87	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	105	108	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	174	179	anti-parallel
Strand 3	A	268	271	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	333	334	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	405	409	parallel
Strand 3	A	361	365	parallel
Strand 4	A	438	441	parallel
Strand 5	A	463	467	parallel
Strand 6	A	336	339	parallel
Strand 7	A	487	490	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	604	607	parallel
Strand 3	A	558	562	parallel
Strand 4	A	622	626	parallel
Strand 5	A	658	664	parallel
Strand 6	A	508	512	parallel
Strand 7	A	688	690	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	8	11	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	455	458	parallel
Strand 3	B	229	234	parallel
Strand 4	B	69	73	parallel
Strand 5	B	204	206	parallel
Strand 6	B	106	108	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	414	419	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	495	first strand
Strand 2	B	675	680	parallel
Strand 3	B	617	620	parallel
Strand 4	B	535	539	parallel
Strand 5	B	594	599	parallel
Strand 6	B	566	569	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	96	100	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	195	196	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	271	272	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	435	first strand
Strand 2	D	440	443	anti-parallel
Strand 3	D	402	409	anti-parallel
Strand 4	G	5	11	anti-parallel
Strand 5	G	42	45	anti-parallel
Strand 6	G	36	37	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	121	first strand
Strand 2	E	103	110	anti-parallel
Strand 3	E	59	66	parallel
Strand 4	E	164	170	parallel
Strand 5	E	195	200	parallel
Strand 6	E	219	221	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	311	312	anti-parallel
Strand 3	E	249	253	parallel
Strand 4	F	264	268	anti-parallel
Strand 5	F	274	275	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	288	290	anti-parallel
Strand 3	E	297	298	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	284	285	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	335	first strand
Strand 2	E	356	359	anti-parallel
Strand 3	E	366	367	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	7	16	parallel
Strand 4	F	156	165	parallel
Strand 5	F	190	195	parallel
Strand 6	F	214	216	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	254	first strand
Strand 2	F	261	262	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	103	104	first strand
Strand 2	K	111	112	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	138	140	first strand
Strand 2	K	178	182	anti-parallel
Strand 3	K	165	167	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	250	251	first strand
Strand 2	K	256	260	anti-parallel
Strand 3	K	267	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EBY