Analysis of interatomic Contacts of Structural Units in PDB entry:
8ED5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ED5 entry

There is 1 chain in PDB entry 8ED5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 41GLY 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 8ED5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 74Right-handed alpha
Helix 2
AA2
A
84 94Right-handed alpha
Helix 3
AA3
A
103 110Right-handed alpha
Helix 4
AA4
A
142 147Right-handed 310
Helix 5
AA5
A
162 172Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
188 198Right-handed alpha
Helix 8
AA8
A
208 218Right-handed alpha
Helix 9
AA9
A
218 223Right-handed alpha
Helix 10
AB1
A
244 246Right-handed 310
Helix 11
AB2
A
248 260Right-handed alpha
Helix 12
AB3
A
261 263Right-handed 310
Helix 13
AB4
A
264 275Right-handed alpha
Helix 14
AB5
A
283 286Right-handed 310
Helix 15
AB6
A
287 300Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8ED5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
49 53parallel
Strand 3
A
99 101parallel
Strand 4
A
239 242anti-parallel
Strand 5
A
114 121anti-parallel
Strand 6
A
278 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
234 235anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
150 153parallel
Strand 3
A
203 207parallel
Strand 4
A
130 135anti-parallel
Strand 5
A
225 230anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il