Analysis of interatomic Contacts of Structural Units in PDB entry:
8ED9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ED9 entry

There are 8 chains in PDB entry 8ED9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 129	SER 1243
E	UNK 1	UNK 17
B	ILE 129	SER 1243
F	UNK 1	UNK 17
C	ILE 129	SER 1243
G	UNK 1	UNK 17
D	ILE 129	SER 1243
H	UNK 1	UNK 17

There are192 helices in PDB entry 8ED9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	175	Right-handed alpha
Helix 2	AA2	A	201	215	Right-handed alpha
Helix 3	AA3	A	228	242	Right-handed alpha
Helix 4	AA4	A	257	259	Right-handed 310
Helix 5	AA5	A	279	283	Right-handed 310
Helix 6	AA6	A	308	321	Right-handed alpha
Helix 7	AA7	A	342	354	Right-handed alpha
Helix 8	AA8	A	369	379	Right-handed alpha
Helix 9	AA9	A	397	401	Right-handed 310
Helix 10	AB1	A	407	411	Right-handed 310
Helix 11	AB2	A	413	423	Right-handed alpha
Helix 12	AB3	A	439	452	Right-handed alpha
Helix 13	AB4	A	455	467	Right-handed alpha
Helix 14	AB5	A	468	475	Right-handed alpha
Helix 15	AB6	A	487	498	Right-handed alpha
Helix 16	AB7	A	500	510	Right-handed alpha
Helix 17	AB8	A	513	518	Right-handed alpha
Helix 18	AB9	A	519	527	Right-handed alpha
Helix 19	AC1	A	536	545	Right-handed alpha
Helix 20	AC2	A	556	569	Right-handed alpha
Helix 21	AC3	A	574	577	Right-handed 310
Helix 22	AC4	A	578	587	Right-handed alpha
Helix 23	AC5	A	636	648	Right-handed alpha
Helix 24	AC6	A	650	659	Right-handed alpha
Helix 25	AC7	A	663	685	Right-handed alpha
Helix 26	AC8	A	690	717	Right-handed alpha
Helix 27	AC9	A	717	725	Right-handed alpha
Helix 28	AD1	A	736	744	Right-handed alpha
Helix 29	AD2	A	746	751	Right-handed alpha
Helix 30	AD3	A	752	765	Right-handed alpha
Helix 31	AD4	A	774	783	Right-handed alpha
Helix 32	AD5	A	784	790	Right-handed 310
Helix 33	AD6	A	862	869	Right-handed alpha
Helix 34	AD7	A	870	895	Right-handed alpha
Helix 35	AD8	A	902	925	Right-handed alpha
Helix 36	AD9	A	930	940	Right-handed alpha
Helix 37	AE1	A	941	962	Right-handed alpha
Helix 38	AE2	A	964	985	Right-handed alpha
Helix 39	AE3	A	985	991	Right-handed alpha
Helix 40	AE4	A	995	1033	Right-handed alpha
Helix 41	AE5	A	1040	1045	Right-handed alpha
Helix 42	AE6	A	1047	1054	Right-handed alpha
Helix 43	AE7	A	1089	1105	Right-handed alpha
Helix 44	AE8	A	1105	1117	Right-handed alpha
Helix 45	AE9	A	1118	1141	Right-handed alpha
Helix 46	AF1	A	1147	1149	Right-handed 310
Helix 47	AF2	A	1150	1163	Right-handed alpha
Helix 48	AF3	A	1186	1214	Right-handed alpha
Helix 49	AF4	A	1215	1239	Right-handed alpha
Helix 50	AF5	B	165	175	Right-handed alpha
Helix 51	AF6	B	201	215	Right-handed alpha
Helix 52	AF7	B	228	242	Right-handed alpha
Helix 53	AF8	B	257	259	Right-handed 310
Helix 54	AF9	B	279	283	Right-handed 310
Helix 55	AG1	B	308	321	Right-handed alpha
Helix 56	AG2	B	342	354	Right-handed alpha
Helix 57	AG3	B	369	379	Right-handed alpha
Helix 58	AG4	B	398	402	Right-handed 310
Helix 59	AG5	B	413	423	Right-handed alpha
Helix 60	AG6	B	439	452	Right-handed alpha
Helix 61	AG7	B	455	467	Right-handed alpha
Helix 62	AG8	B	468	475	Right-handed alpha
Helix 63	AG9	B	487	498	Right-handed alpha
Helix 64	AH1	B	500	510	Right-handed alpha
Helix 65	AH2	B	513	518	Right-handed alpha
Helix 66	AH3	B	519	528	Right-handed alpha
Helix 67	AH4	B	536	545	Right-handed alpha
Helix 68	AH5	B	556	569	Right-handed alpha
Helix 69	AH6	B	574	577	Right-handed 310
Helix 70	AH7	B	578	587	Right-handed alpha
Helix 71	AH8	B	636	648	Right-handed alpha
Helix 72	AH9	B	650	659	Right-handed alpha
Helix 73	AI1	B	663	683	Right-handed alpha
Helix 74	AI2	B	690	717	Right-handed alpha
Helix 75	AI3	B	717	725	Right-handed alpha
Helix 76	AI4	B	736	744	Right-handed alpha
Helix 77	AI5	B	746	751	Right-handed alpha
Helix 78	AI6	B	752	764	Right-handed alpha
Helix 79	AI7	B	774	783	Right-handed alpha
Helix 80	AI8	B	784	790	Right-handed 310
Helix 81	AI9	B	862	869	Right-handed alpha
Helix 82	AJ1	B	870	895	Right-handed alpha
Helix 83	AJ2	B	902	925	Right-handed alpha
Helix 84	AJ3	B	930	939	Right-handed alpha
Helix 85	AJ4	B	941	962	Right-handed alpha
Helix 86	AJ5	B	964	985	Right-handed alpha
Helix 87	AJ6	B	985	991	Right-handed alpha
Helix 88	AJ7	B	997	1033	Right-handed alpha
Helix 89	AJ8	B	1040	1055	Right-handed alpha
Helix 90	AJ9	B	1089	1105	Right-handed alpha
Helix 91	AK1	B	1105	1117	Right-handed alpha
Helix 92	AK2	B	1118	1143	Right-handed alpha
Helix 93	AK3	B	1147	1149	Right-handed 310
Helix 94	AK4	B	1150	1163	Right-handed alpha
Helix 95	AK5	B	1186	1214	Right-handed alpha
Helix 96	AK6	B	1215	1240	Right-handed alpha
Helix 97	AK7	F	1	5	Right-handed 310
Helix 98	AK8	C	165	175	Right-handed alpha
Helix 99	AK9	C	198	215	Right-handed alpha
Helix 100	AL1	C	228	242	Right-handed alpha
Helix 101	AL2	C	257	259	Right-handed 310
Helix 102	AL3	C	262	266	Right-handed 310
Helix 103	AL4	C	279	283	Right-handed 310
Helix 104	AL5	C	308	321	Right-handed alpha
Helix 105	AL6	C	342	355	Right-handed alpha
Helix 106	AL7	C	369	379	Right-handed alpha
Helix 107	AL8	C	397	402	Right-handed 310
Helix 108	AL9	C	413	423	Right-handed alpha
Helix 109	AM1	C	439	452	Right-handed alpha
Helix 110	AM2	C	455	467	Right-handed alpha
Helix 111	AM3	C	468	475	Right-handed alpha
Helix 112	AM4	C	487	498	Right-handed alpha
Helix 113	AM5	C	500	510	Right-handed alpha
Helix 114	AM6	C	513	518	Right-handed alpha
Helix 115	AM7	C	519	528	Right-handed alpha
Helix 116	AM8	C	536	545	Right-handed alpha
Helix 117	AM9	C	556	569	Right-handed alpha
Helix 118	AN1	C	574	577	Right-handed 310
Helix 119	AN2	C	578	587	Right-handed alpha
Helix 120	AN3	C	636	648	Right-handed alpha
Helix 121	AN4	C	650	659	Right-handed alpha
Helix 122	AN5	C	663	685	Right-handed alpha
Helix 123	AN6	C	690	717	Right-handed alpha
Helix 124	AN7	C	717	725	Right-handed alpha
Helix 125	AN8	C	736	744	Right-handed alpha
Helix 126	AN9	C	746	751	Right-handed alpha
Helix 127	AO1	C	752	765	Right-handed alpha
Helix 128	AO2	C	774	783	Right-handed alpha
Helix 129	AO3	C	784	790	Right-handed 310
Helix 130	AO4	C	862	869	Right-handed alpha
Helix 131	AO5	C	870	895	Right-handed alpha
Helix 132	AO6	C	902	925	Right-handed alpha
Helix 133	AO7	C	930	939	Right-handed alpha
Helix 134	AO8	C	941	962	Right-handed alpha
Helix 135	AO9	C	964	985	Right-handed alpha
Helix 136	AP1	C	985	991	Right-handed alpha
Helix 137	AP2	C	997	1033	Right-handed alpha
Helix 138	AP3	C	1040	1045	Right-handed alpha
Helix 139	AP4	C	1047	1055	Right-handed alpha
Helix 140	AP5	C	1089	1105	Right-handed alpha
Helix 141	AP6	C	1105	1117	Right-handed alpha
Helix 142	AP7	C	1118	1141	Right-handed alpha
Helix 143	AP8	C	1147	1149	Right-handed 310
Helix 144	AP9	C	1150	1163	Right-handed alpha
Helix 145	AQ1	C	1186	1214	Right-handed alpha
Helix 146	AQ2	C	1215	1239	Right-handed alpha
Helix 147	AQ3	D	165	176	Right-handed alpha
Helix 148	AQ4	D	205	215	Right-handed alpha
Helix 149	AQ5	D	228	242	Right-handed alpha
Helix 150	AQ6	D	257	259	Right-handed 310
Helix 151	AQ7	D	308	321	Right-handed alpha
Helix 152	AQ8	D	342	354	Right-handed alpha
Helix 153	AQ9	D	369	379	Right-handed alpha
Helix 154	AR1	D	398	402	Right-handed 310
Helix 155	AR2	D	413	420	Right-handed alpha
Helix 156	AR3	D	439	452	Right-handed alpha
Helix 157	AR4	D	455	467	Right-handed alpha
Helix 158	AR5	D	468	475	Right-handed alpha
Helix 159	AR6	D	487	498	Right-handed alpha
Helix 160	AR7	D	500	510	Right-handed alpha
Helix 161	AR8	D	513	518	Right-handed alpha
Helix 162	AR9	D	519	528	Right-handed alpha
Helix 163	AS1	D	536	544	Right-handed alpha
Helix 164	AS2	D	556	569	Right-handed alpha
Helix 165	AS3	D	574	577	Right-handed 310
Helix 166	AS4	D	578	587	Right-handed alpha
Helix 167	AS5	D	636	648	Right-handed alpha
Helix 168	AS6	D	650	659	Right-handed alpha
Helix 169	AS7	D	663	685	Right-handed alpha
Helix 170	AS8	D	690	717	Right-handed alpha
Helix 171	AS9	D	717	725	Right-handed alpha
Helix 172	AT1	D	736	744	Right-handed alpha
Helix 173	AT2	D	746	751	Right-handed alpha
Helix 174	AT3	D	752	765	Right-handed alpha
Helix 175	AT4	D	774	783	Right-handed alpha
Helix 176	AT5	D	784	787	Right-handed 310
Helix 177	AT6	D	862	869	Right-handed alpha
Helix 178	AT7	D	870	895	Right-handed alpha
Helix 179	AT8	D	902	925	Right-handed alpha
Helix 180	AT9	D	930	939	Right-handed alpha
Helix 181	AU1	D	941	962	Right-handed alpha
Helix 182	AU2	D	964	985	Right-handed alpha
Helix 183	AU3	D	985	991	Right-handed alpha
Helix 184	AU4	D	995	1033	Right-handed alpha
Helix 185	AU5	D	1040	1054	Right-handed alpha
Helix 186	AU6	D	1089	1105	Right-handed alpha
Helix 187	AU7	D	1105	1117	Right-handed alpha
Helix 188	AU8	D	1118	1141	Right-handed alpha
Helix 189	AU9	D	1147	1149	Right-handed 310
Helix 190	AV1	D	1150	1163	Right-handed alpha
Helix 191	AV2	D	1186	1214	Right-handed alpha
Helix 192	AV3	D	1215	1239	Right-handed alpha

There are 9 sheets in PDB entry 8ED9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	E	10	11	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	275	first strand
Strand 2	A	140	147	parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	293	298	parallel
Strand 5	A	250	255	parallel
Strand 6	A	218	222	parallel
Strand 7	A	184	187	parallel
Strand 8	A	334	338	parallel
Strand 9	A	361	364	parallel
Strand 10	A	428	430	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	F	10	11	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	251	255	parallel
Strand 3	B	293	298	parallel
Strand 4	B	154	161	parallel
Strand 5	B	141	147	anti-parallel
Strand 6	B	271	275	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	184	190	parallel
Strand 3	B	334	339	parallel
Strand 4	B	361	364	parallel
Strand 5	B	427	430	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	G	10	11	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	275	first strand
Strand 2	C	140	147	parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	293	298	parallel
Strand 5	C	250	255	parallel
Strand 6	C	218	222	parallel
Strand 7	C	184	190	parallel
Strand 8	C	334	339	parallel
Strand 9	C	361	364	parallel
Strand 10	C	428	430	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	H	10	11	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	275	first strand
Strand 2	D	141	147	parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	293	298	parallel
Strand 5	D	250	255	parallel
Strand 6	D	218	222	parallel
Strand 7	D	184	190	parallel
Strand 8	D	334	339	parallel
Strand 9	D	361	364	parallel
Strand 10	D	428	430	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ED9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ED9