Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EDD entry

There is 1 chain in PDB entry 8EDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8EDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
45 48Right-handed 310
Helix 3
AA3
A
49 61Right-handed alpha
Helix 4
AA4
A
80 102Right-handed alpha
Helix 5
AA5
A
117 133Right-handed alpha
Helix 6
AA6
A
156 168Right-handed alpha
Helix 7
AA7
A
169 171Right-handed 310
Helix 8
AA8
A
179 186Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
205 207Right-handed 310
Helix 11
AB2
A
237 246Right-handed alpha
Helix 12
AB3
A
247 251Right-handed 310
Helix 13
AB4
A
265 269Right-handed 310
Helix 14
AB5
A
272 283Right-handed alpha
Helix 15
AB6
A
288 294Right-handed alpha
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There are 3 sheets in PDB entry 8EDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
29 32parallel
Strand 3
A
66 68parallel
Strand 4
A
105 108parallel
Strand 5
A
140 144parallel
Strand 6
A
173 178parallel
Strand 7
A
209 214parallel
Strand 8
A
255 257parallel
Strand 9
A
3 6parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
152 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
228 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il