Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EDG entry

There are 12 chains in PDB entry 8EDG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	G 1	A 7
N	A 1	G 46
O	C 1	C 55
Q	A 1	G 46
R	C 1	C 55
P	G 1	A 7
A	MET 4	LYS 609
C	MET 4	LYS 609
I	MET 4	LEU 77
E	MET 4	LYS 609
G	MET 4	LYS 609
K	MET 4	LEU 77

There are112 helices in PDB entry 8EDG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	15	Right-handed alpha
Helix 2	AA2	A	29	32	Right-handed 310
Helix 3	AA3	A	66	71	Right-handed 310
Helix 4	AA4	A	75	80	Right-handed alpha
Helix 5	AA5	A	87	105	Right-handed alpha
Helix 6	AA6	A	108	112	Right-handed 310
Helix 7	AA7	A	114	131	Right-handed alpha
Helix 8	AA8	A	136	141	Right-handed alpha
Helix 9	AA9	A	143	172	Right-handed alpha
Helix 10	AB1	A	220	234	Right-handed alpha
Helix 11	AB2	A	250	257	Right-handed alpha
Helix 12	AB3	A	265	279	Right-handed alpha
Helix 13	AB4	A	281	301	Right-handed alpha
Helix 14	AB5	A	302	306	Right-handed 310
Helix 15	AB6	A	320	344	Right-handed alpha
Helix 16	AB7	A	345	350	Right-handed alpha
Helix 17	AB8	A	353	375	Right-handed alpha
Helix 18	AB9	A	385	396	Right-handed alpha
Helix 19	AC1	A	403	420	Right-handed alpha
Helix 20	AC2	A	421	425	Right-handed 310
Helix 21	AC3	A	426	435	Right-handed alpha
Helix 22	AC4	A	445	459	Right-handed alpha
Helix 23	AC5	A	519	528	Right-handed alpha
Helix 24	AC6	A	539	551	Right-handed alpha
Helix 25	AC7	A	551	563	Right-handed alpha
Helix 26	AC8	A	568	582	Right-handed alpha
Helix 27	AC9	A	583	587	Right-handed 310
Helix 28	AD1	A	590	607	Right-handed alpha
Helix 29	AD2	C	5	15	Right-handed alpha
Helix 30	AD3	C	28	32	Right-handed 310
Helix 31	AD4	C	66	75	Right-handed 310
Helix 32	AD5	C	87	106	Right-handed alpha
Helix 33	AD6	C	108	113	Right-handed 310
Helix 34	AD7	C	114	132	Right-handed alpha
Helix 35	AD8	C	136	141	Right-handed alpha
Helix 36	AD9	C	143	171	Right-handed alpha
Helix 37	AE1	C	220	235	Right-handed alpha
Helix 38	AE2	C	250	257	Right-handed alpha
Helix 39	AE3	C	265	280	Right-handed alpha
Helix 40	AE4	C	281	302	Right-handed alpha
Helix 41	AE5	C	321	344	Right-handed alpha
Helix 42	AE6	C	345	349	Right-handed 310
Helix 43	AE7	C	353	375	Right-handed alpha
Helix 44	AE8	C	385	396	Right-handed alpha
Helix 45	AE9	C	403	420	Right-handed alpha
Helix 46	AF1	C	420	425	Right-handed alpha
Helix 47	AF2	C	426	435	Right-handed alpha
Helix 48	AF3	C	444	456	Right-handed alpha
Helix 49	AF4	C	519	529	Right-handed alpha
Helix 50	AF5	C	539	547	Right-handed alpha
Helix 51	AF6	C	553	563	Right-handed alpha
Helix 52	AF7	C	568	582	Right-handed alpha
Helix 53	AF8	C	590	607	Right-handed alpha
Helix 54	AF9	I	5	15	Right-handed alpha
Helix 55	AG1	I	66	70	Right-handed 310
Helix 56	AG2	I	71	77	Right-handed alpha
Helix 57	AG3	E	5	16	Right-handed alpha
Helix 58	AG4	E	29	33	Right-handed 310
Helix 59	AG5	E	65	70	Right-handed 310
Helix 60	AG6	E	71	78	Right-handed alpha
Helix 61	AG7	E	87	105	Right-handed alpha
Helix 62	AG8	E	108	113	Right-handed 310
Helix 63	AG9	E	114	132	Right-handed alpha
Helix 64	AH1	E	136	141	Right-handed alpha
Helix 65	AH2	E	143	172	Right-handed alpha
Helix 66	AH3	E	220	234	Right-handed alpha
Helix 67	AH4	E	250	257	Right-handed alpha
Helix 68	AH5	E	265	280	Right-handed alpha
Helix 69	AH6	E	281	301	Right-handed alpha
Helix 70	AH7	E	321	331	Right-handed alpha
Helix 71	AH8	E	332	344	Right-handed alpha
Helix 72	AH9	E	345	352	Right-handed 310
Helix 73	AI1	E	353	375	Right-handed alpha
Helix 74	AI2	E	385	396	Right-handed alpha
Helix 75	AI3	E	403	421	Right-handed alpha
Helix 76	AI4	E	422	425	Right-handed 310
Helix 77	AI5	E	426	435	Right-handed alpha
Helix 78	AI6	E	444	458	Right-handed alpha
Helix 79	AI7	E	519	530	Right-handed alpha
Helix 80	AI8	E	539	548	Right-handed alpha
Helix 81	AI9	E	553	563	Right-handed alpha
Helix 82	AJ1	E	568	582	Right-handed alpha
Helix 83	AJ2	E	590	607	Right-handed alpha
Helix 84	AJ3	G	5	16	Right-handed alpha
Helix 85	AJ4	G	29	32	Right-handed 310
Helix 86	AJ5	G	65	70	Right-handed alpha
Helix 87	AJ6	G	71	78	Right-handed alpha
Helix 88	AJ7	G	87	106	Right-handed alpha
Helix 89	AJ8	G	108	113	Right-handed 310
Helix 90	AJ9	G	114	132	Right-handed alpha
Helix 91	AK1	G	136	141	Right-handed alpha
Helix 92	AK2	G	143	172	Right-handed alpha
Helix 93	AK3	G	220	235	Right-handed alpha
Helix 94	AK4	G	250	257	Right-handed alpha
Helix 95	AK5	G	265	280	Right-handed alpha
Helix 96	AK6	G	281	301	Right-handed alpha
Helix 97	AK7	G	320	332	Right-handed alpha
Helix 98	AK8	G	332	342	Right-handed alpha
Helix 99	AK9	G	345	350	Right-handed alpha
Helix 100	AL1	G	353	375	Right-handed alpha
Helix 101	AL2	G	385	396	Right-handed alpha
Helix 102	AL3	G	403	421	Right-handed alpha
Helix 103	AL4	G	426	435	Right-handed alpha
Helix 104	AL5	G	445	460	Right-handed alpha
Helix 105	AL6	G	519	529	Right-handed alpha
Helix 106	AL7	G	539	548	Right-handed alpha
Helix 107	AL8	G	551	563	Right-handed alpha
Helix 108	AL9	G	568	582	Right-handed alpha
Helix 109	AM1	G	590	607	Right-handed alpha
Helix 110	AM2	K	5	15	Right-handed alpha
Helix 111	AM3	K	28	33	Right-handed 310
Helix 112	AM4	K	71	77	Right-handed alpha

There are 16 sheets in PDB entry 8EDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	A	44	51	anti-parallel
Strand 4	A	57	59	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	213	first strand
Strand 2	A	190	199	anti-parallel
Strand 3	A	176	183	anti-parallel
Strand 4	A	244	247	parallel
Strand 5	A	262	264	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	34	37	anti-parallel
Strand 3	C	48	51	anti-parallel
Strand 4	C	57	59	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	213	first strand
Strand 2	C	190	198	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	244	246	parallel
Strand 5	C	262	263	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	21	first strand
Strand 2	I	36	38	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	57	59	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	36	38	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	57	59	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	183	first strand
Strand 2	E	190	199	anti-parallel
Strand 3	E	204	213	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	246	first strand
Strand 2	E	262	263	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	34	38	anti-parallel
Strand 3	G	44	51	anti-parallel
Strand 4	G	57	59	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	177	first strand
Strand 2	G	244	247	parallel
Strand 3	G	263	264	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	183	first strand
Strand 2	G	190	194	anti-parallel
Strand 3	G	210	213	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	197	199	first strand
Strand 2	G	204	206	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	21	first strand
Strand 2	K	36	37	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	50	first strand
Strand 2	K	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EDG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDG