Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EDH entry

There are 2 chains in PDB entry 8EDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 137ALA 406
C
 LYS 136GLU 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8EDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 183Right-handed 310
Helix 2
AA2
A
184 186Right-handed 310
Helix 3
AA3
A
187 200Right-handed alpha
Helix 4
AA4
A
234 243Right-handed alpha
Helix 5
AA5
A
246 266Right-handed alpha
Helix 6
AA6
A
295 299Right-handed 310
Helix 7
AA7
A
317 321Right-handed 310
Helix 8
AA8
A
326 344Right-handed alpha
Helix 9
AA9
A
353 363Right-handed alpha
Helix 10
AB1
A
367 373Right-handed 310
Helix 11
AB2
A
375 386Right-handed alpha
Helix 12
AB3
A
389 393Right-handed 310
Helix 13
AB4
A
395 401Right-handed alpha
Helix 14
AB5
C
184 200Right-handed alpha
Helix 15
AB6
C
234 242Right-handed alpha
Helix 16
AB7
C
246 266Right-handed alpha
Helix 17
AB8
C
277 279Right-handed 310
Helix 18
AB9
C
295 300Right-handed 310
Helix 19
AC1
C
317 322Right-handed 310
Helix 20
AC2
C
326 344Right-handed alpha
Helix 21
AC3
C
353 363Right-handed alpha
Helix 22
AC4
C
367 373Right-handed 310
Helix 23
AC5
C
375 386Right-handed alpha
Helix 24
AC6
C
389 393Right-handed 310
Helix 25
AC7
C
395 402Right-handed alpha
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There are 5 sheets in PDB entry 8EDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
146 154anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
172 179anti-parallel
Strand 5
A
220 228anti-parallel
Strand 6
A
209 213anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
146 154anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
172 179anti-parallel
Strand 5
A
220 228anti-parallel
Strand 6
A
216 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
290 292anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 140first strand
Strand 2
C
146 154anti-parallel
Strand 3
C
161 166anti-parallel
Strand 4
C
172 178anti-parallel
Strand 5
C
220 228anti-parallel
Strand 6
C
209 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 283first strand
Strand 2
C
290 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il