Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EDJ entry

There are 2 chains in PDB entry 8EDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ASN 380
R
 U 4 U 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8EDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
13 22Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
65 80Right-handed alpha
Helix 5
AA5
A
97 110Right-handed alpha
Helix 6
AA6
A
128 141Right-handed alpha
Helix 7
AA7
A
153 165Right-handed alpha
Helix 8
AA8
A
177 193Right-handed alpha
Helix 9
AA9
A
198 207Right-handed alpha
Helix 10
AB1
A
257 269Right-handed alpha
Helix 11
AB2
A
287 301Right-handed alpha
Helix 12
AB3
A
319 330Right-handed alpha
Helix 13
AB4
A
338 350Right-handed alpha
Helix 14
AB5
A
362 380Right-handed alpha
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There are 3 sheets in PDB entry 8EDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 57first strand
Strand 2
A
32 40anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
114 122parallel
Strand 5
A
148 151parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
240 243anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
276 284anti-parallel
Strand 4
A
304 312parallel
Strand 5
A
333 336parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il