Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EDM entry

There are 2 chains in PDB entry 8EDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3THR 101
B
 LEU 2228LEU 2722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8EDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 20Right-handed alpha
Helix 2
AA2
A
31 51Right-handed alpha
Helix 3
AA3
A
51 67Right-handed alpha
Helix 4
AA4
A
72 97Right-handed alpha
Helix 5
AA5
B
2229 2235Right-handed alpha
Helix 6
AA6
B
2239 2260Right-handed alpha
Helix 7
AA7
B
2262 2281Right-handed alpha
Helix 8
AA8
B
2282 2284Right-handed 310
Helix 9
AA9
B
2289 2303Right-handed alpha
Helix 10
AB1
B
2306 2327Right-handed alpha
Helix 11
AB2
B
2334 2344Right-handed alpha
Helix 12
AB3
B
2346 2358Right-handed alpha
Helix 13
AB4
B
2364 2374Right-handed alpha
Helix 14
AB5
B
2374 2379Right-handed alpha
Helix 15
AB6
B
2381 2403Right-handed alpha
Helix 16
AB7
B
2413 2423Right-handed alpha
Helix 17
AB8
B
2591 2608Right-handed alpha
Helix 18
AB9
B
2611 2629Right-handed alpha
Helix 19
AC1
B
2632 2637Right-handed alpha
Helix 20
AC2
B
2640 2651Right-handed alpha
Helix 21
AC3
B
2653 2670Right-handed alpha
Helix 22
AC4
B
2674 2677Right-handed 310
Helix 23
AC5
B
2678 2684Right-handed alpha
Helix 24
AC6
B
2706 2721Right-handed alpha
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There are no sheets in PDB entry 8EDM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il