Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EDR entry

There are 2 chains in PDB entry 8EDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 470
B
 MET 1LEU 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8EDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 27Right-handed alpha
Helix 3
AA3
A
39 58Right-handed alpha
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
171 185Right-handed alpha
Helix 7
AA7
A
196 209Right-handed alpha
Helix 8
AA8
A
223 229Right-handed alpha
Helix 9
AA9
A
229 237Right-handed alpha
Helix 10
AB1
A
244 251Right-handed alpha
Helix 11
AB2
A
252 254Right-handed 310
Helix 12
AB3
A
255 271Right-handed alpha
Helix 13
AB4
A
281 286Right-handed 310
Helix 14
AB5
A
291 305Right-handed alpha
Helix 15
AB6
A
312 317Right-handed alpha
Helix 16
AB7
A
320 337Right-handed alpha
Helix 17
AB8
A
354 369Right-handed alpha
Helix 18
AB9
A
381 389Right-handed alpha
Helix 19
AC1
A
402 410Right-handed alpha
Helix 20
AC2
A
425 440Right-handed alpha
Helix 21
AC3
B
16 27Right-handed alpha
Helix 22
AC4
B
39 58Right-handed alpha
Helix 23
AC5
B
77 81Right-handed 310
Helix 24
AC6
B
112 117Right-handed alpha
Helix 25
AC7
B
171 185Right-handed alpha
Helix 26
AC8
B
196 209Right-handed alpha
Helix 27
AC9
B
223 229Right-handed alpha
Helix 28
AD1
B
229 237Right-handed alpha
Helix 29
AD2
B
244 251Right-handed alpha
Helix 30
AD3
B
252 254Right-handed 310
Helix 31
AD4
B
255 270Right-handed alpha
Helix 32
AD5
B
281 286Right-handed 310
Helix 33
AD6
B
291 305Right-handed alpha
Helix 34
AD7
B
312 317Right-handed alpha
Helix 35
AD8
B
320 337Right-handed alpha
Helix 36
AD9
B
353 369Right-handed alpha
Helix 37
AE1
B
381 389Right-handed alpha
Helix 38
AE2
B
402 409Right-handed alpha
Helix 39
AE3
B
410 412Right-handed 310
Helix 40
AE4
B
425 440Right-handed alpha
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There are 7 sheets in PDB entry 8EDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
30 34parallel
Strand 3
A
62 66parallel
Strand 4
A
188 191parallel
Strand 5
A
216 221parallel
Strand 6
A
239 243parallel
Strand 7
A
273 277parallel
Strand 8
A
308 311parallel
Strand 9
A
5 9parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
150 152anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
90 94parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
130 138anti-parallel
Strand 5
A
122 125anti-parallel
Strand 6
A
158 159anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 419first strand
Strand 2
A
395 400parallel
Strand 3
A
373 377parallel
Strand 4
A
448 453parallel
Strand 5
A
464 469anti-parallel
Strand 6
B
464 469anti-parallel
Strand 7
B
448 453anti-parallel
Strand 8
B
373 377parallel
Strand 9
B
395 400parallel
Strand 10
B
415 419parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
30 34parallel
Strand 3
B
62 66parallel
Strand 4
B
188 191parallel
Strand 5
B
216 221parallel
Strand 6
B
239 243parallel
Strand 7
B
273 277parallel
Strand 8
B
308 311parallel
Strand 9
B
5 9parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
157 159anti-parallel
Strand 3
B
122 125anti-parallel
Strand 4
B
130 138anti-parallel
Strand 5
B
141 146anti-parallel
Strand 6
B
90 94anti-parallel
Strand 7
B
105 107parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
150 152anti-parallel
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