Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EDU entry

There are 7 chains in PDB entry 8EDU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLY 320
G	ALA 2	ALA 317
D	ALA 2	ALA 317
F	ALA 2	GLY 319
B	ALA 2	ALA 317
E	ALA 2	GLY 318
C	ALA 2	GLY 318

There are 52 helices in PDB entry 8EDU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	35	40	Right-handed alpha
Helix 3	AA3	A	96	102	Right-handed alpha
Helix 4	AA4	A	105	127	Right-handed alpha
Helix 5	AA5	A	139	148	Right-handed alpha
Helix 6	AA6	A	158	174	Right-handed alpha
Helix 7	AA7	A	185	192	Right-handed alpha
Helix 8	AA8	A	204	208	Right-handed 310
Helix 9	AA9	G	9	13	Right-handed 310
Helix 10	AB1	G	34	40	Right-handed alpha
Helix 11	AB2	G	96	102	Right-handed alpha
Helix 12	AB3	G	105	127	Right-handed alpha
Helix 13	AB4	G	139	148	Right-handed alpha
Helix 14	AB5	G	158	174	Right-handed alpha
Helix 15	AB6	G	185	191	Right-handed alpha
Helix 16	AB7	D	9	13	Right-handed 310
Helix 17	AB8	D	35	40	Right-handed alpha
Helix 18	AB9	D	96	102	Right-handed alpha
Helix 19	AC1	D	105	127	Right-handed alpha
Helix 20	AC2	D	139	148	Right-handed alpha
Helix 21	AC3	D	158	174	Right-handed alpha
Helix 22	AC4	D	185	191	Right-handed alpha
Helix 23	AC5	D	204	208	Right-handed 310
Helix 24	AC6	F	9	13	Right-handed 310
Helix 25	AC7	F	35	40	Right-handed alpha
Helix 26	AC8	F	96	102	Right-handed alpha
Helix 27	AC9	F	105	127	Right-handed alpha
Helix 28	AD1	F	139	148	Right-handed alpha
Helix 29	AD2	F	158	173	Right-handed alpha
Helix 30	AD3	F	185	192	Right-handed alpha
Helix 31	AD4	F	204	208	Right-handed 310
Helix 32	AD5	B	9	13	Right-handed 310
Helix 33	AD6	B	35	40	Right-handed alpha
Helix 34	AD7	B	96	102	Right-handed alpha
Helix 35	AD8	B	105	127	Right-handed alpha
Helix 36	AD9	B	139	148	Right-handed alpha
Helix 37	AE1	B	158	173	Right-handed alpha
Helix 38	AE2	B	185	192	Right-handed alpha
Helix 39	AE3	E	35	40	Right-handed alpha
Helix 40	AE4	E	96	102	Right-handed alpha
Helix 41	AE5	E	105	127	Right-handed alpha
Helix 42	AE6	E	139	148	Right-handed alpha
Helix 43	AE7	E	158	172	Right-handed alpha
Helix 44	AE8	E	185	192	Right-handed alpha
Helix 45	AE9	C	9	13	Right-handed 310
Helix 46	AF1	C	35	40	Right-handed alpha
Helix 47	AF2	C	96	102	Right-handed alpha
Helix 48	AF3	C	105	127	Right-handed alpha
Helix 49	AF4	C	139	148	Right-handed alpha
Helix 50	AF5	C	158	174	Right-handed alpha
Helix 51	AF6	C	185	192	Right-handed alpha
Helix 52	AF7	C	204	208	Right-handed 310

There are 32 sheets in PDB entry 8EDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	B	49	55	parallel
Strand 3	B	78	95	anti-parallel
Strand 4	B	281	294	anti-parallel
Strand 5	B	247	260	anti-parallel
Strand 6	B	41	44	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	B	49	55	parallel
Strand 3	B	78	95	anti-parallel
Strand 4	C	62	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	247	260	parallel
Strand 3	A	281	294	anti-parallel
Strand 4	A	78	95	anti-parallel
Strand 5	A	49	55	anti-parallel
Strand 6	F	21	22	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	247	260	parallel
Strand 3	A	281	294	anti-parallel
Strand 4	A	78	95	anti-parallel
Strand 5	B	62	63	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	F	86	95	anti-parallel
Strand 3	F	281	294	anti-parallel
Strand 4	F	247	260	anti-parallel
Strand 5	F	41	44	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	311	315	parallel
Strand 3	A	239	242	anti-parallel
Strand 4	A	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	44	first strand
Strand 2	G	247	260	parallel
Strand 3	G	281	294	anti-parallel
Strand 4	G	78	95	anti-parallel
Strand 5	G	49	55	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	152	first strand
Strand 2	G	311	315	parallel
Strand 3	G	239	242	anti-parallel
Strand 4	G	179	182	anti-parallel
Strand 5	G	222	226	parallel
Strand 6	G	218	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	264	266	first strand
Strand 2	G	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	E	49	55	parallel
Strand 3	E	78	84	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	247	260	parallel
Strand 3	D	281	294	anti-parallel
Strand 4	D	78	95	anti-parallel
Strand 5	E	62	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	247	260	parallel
Strand 3	D	281	294	anti-parallel
Strand 4	D	78	95	anti-parallel
Strand 5	D	49	55	anti-parallel
Strand 6	C	21	22	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	C	86	95	anti-parallel
Strand 3	C	281	294	anti-parallel
Strand 4	C	247	260	anti-parallel
Strand 5	C	41	44	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	311	315	parallel
Strand 3	D	239	242	anti-parallel
Strand 4	D	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	266	first strand
Strand 2	D	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	84	first strand
Strand 2	F	49	57	anti-parallel
Strand 3	E	21	22	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	63	first strand
Strand 2	E	86	95	anti-parallel
Strand 3	E	281	294	anti-parallel
Strand 4	E	247	260	anti-parallel
Strand 5	E	41	44	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	311	315	parallel
Strand 3	F	239	242	anti-parallel
Strand 4	F	180	182	anti-parallel
Strand 5	F	222	226	parallel
Strand 6	F	218	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	266	first strand
Strand 2	F	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	C	49	57	parallel
Strand 3	C	77	84	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	311	315	parallel
Strand 3	B	239	242	anti-parallel
Strand 4	B	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	311	315	parallel
Strand 3	E	239	242	anti-parallel
Strand 4	E	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	219	first strand
Strand 2	E	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	266	first strand
Strand 2	E	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	311	315	parallel
Strand 3	C	239	242	anti-parallel
Strand 4	C	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	272	275	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EDU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDU