Analysis of interatomic Contacts of Structural Units in PDB entry:
8EDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EDW entry

There is 1 chain in PDB entry 8EDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3ASP 2103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 79 helices in PDB entry 8EDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
23 46Right-handed alpha
Helix 3
AA3
A
66 76Right-handed alpha
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
100 120Right-handed alpha
Helix 6
AA6
A
188 196Right-handed alpha
Helix 7
AA7
A
197 208Right-handed alpha
Helix 8
AA8
A
215 225Right-handed alpha
Helix 9
AA9
A
265 275Right-handed alpha
Helix 10
AB1
A
277 292Right-handed alpha
Helix 11
AB2
A
301 319Right-handed alpha
Helix 12
AB3
A
320 339Right-handed alpha
Helix 13
AB4
A
389 406Right-handed alpha
Helix 14
AB5
A
417 431Right-handed alpha
Helix 15
AB6
A
502 520Right-handed alpha
Helix 16
AB7
A
541 575Right-handed alpha
Helix 17
AB8
A
576 584Right-handed alpha
Helix 18
AB9
A
587 617Right-handed alpha
Helix 19
AC1
A
624 647Right-handed alpha
Helix 20
AC2
A
648 650Right-handed 310
Helix 21
AC3
A
652 666Right-handed alpha
Helix 22
AC4
A
668 677Right-handed alpha
Helix 23
AC5
A
683 690Right-handed alpha
Helix 24
AC6
A
692 710Right-handed alpha
Helix 25
AC7
A
715 719Right-handed 310
Helix 26
AC8
A
729 752Right-handed alpha
Helix 27
AC9
A
846 855Right-handed alpha
Helix 28
AD1
A
871 876Right-handed alpha
Helix 29
AD2
A
879 883Right-handed 310
Helix 30
AD3
A
897 908Right-handed alpha
Helix 31
AD4
A
915 928Right-handed alpha
Helix 32
AD5
A
931 936Right-handed alpha
Helix 33
AD6
A
944 953Right-handed alpha
Helix 34
AD7
A
971 973Right-handed 310
Helix 35
AD8
A
974 985Right-handed alpha
Helix 36
AD9
A
999 1004Right-handed alpha
Helix 37
AE1
A
1021 1027Right-handed alpha
Helix 38
AE2
A
1074 1086Right-handed alpha
Helix 39
AE3
A
1109 1123Right-handed alpha
Helix 40
AE4
A
1123 1128Right-handed alpha
Helix 41
AE5
A
1138 1155Right-handed alpha
Helix 42
AE6
A
1215 1235Right-handed alpha
Helix 43
AE7
A
1235 1257Right-handed alpha
Helix 44
AE8
A
1272 1276Right-handed 310
Helix 45
AE9
A
1290 1304Right-handed alpha
Helix 46
AF1
A
1310 1317Right-handed alpha
Helix 47
AF2
A
1324 1334Right-handed alpha
Helix 48
AF3
A
1387 1400Right-handed alpha
Helix 49
AF4
A
1401 1403Right-handed 310
Helix 50
AF5
A
1429 1442Right-handed alpha
Helix 51
AF6
A
1449 1465Right-handed alpha
Helix 52
AF7
A
1481 1499Right-handed alpha
Helix 53
AF8
A
1502 1507Right-handed 310
Helix 54
AF9
A
1520 1528Right-handed alpha
Helix 55
AG1
A
1529 1531Right-handed 310
Helix 56
AG2
A
1533 1547Right-handed alpha
Helix 57
AG3
A
1548 1563Right-handed alpha
Helix 58
AG4
A
1564 1571Right-handed alpha
Helix 59
AG5
A
1575 1605Right-handed alpha
Helix 60
AG6
A
1615 1631Right-handed alpha
Helix 61
AG7
A
1632 1634Right-handed 310
Helix 62
AG8
A
1635 1639Right-handed 310
Helix 63
AG9
A
1643 1672Right-handed alpha
Helix 64
AH1
A
1675 1680Right-handed 310
Helix 65
AH2
A
1681 1689Right-handed alpha
Helix 66
AH3
A
1691 1715Right-handed alpha
Helix 67
AH4
A
1730 1753Right-handed alpha
Helix 68
AH5
A
1775 1786Right-handed alpha
Helix 69
AH6
A
1832 1842Right-handed alpha
Helix 70
AH7
A
1861 1868Right-handed alpha
Helix 71
AH8
A
1883 1896Right-handed alpha
Helix 72
AH9
A
1898 1912Right-handed alpha
Helix 73
AI1
A
1927 1941Right-handed alpha
Helix 74
AI2
A
1957 1974Right-handed alpha
Helix 75
AI3
A
1984 1992Right-handed alpha
Helix 76
AI4
A
2008 2016Right-handed alpha
Helix 77
AI5
A
2030 2042Right-handed alpha
Helix 78
AI6
A
2067 2081Right-handed alpha
Helix 79
AI7
A
2094 2103Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8EDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
537 539anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
526 531anti-parallel
Strand 3
A
1470 1475parallel
Strand 4
A
1415 1419anti-parallel
Strand 5
A
1284 1285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
461 467anti-parallel
Strand 3
A
1509 1514parallel
Strand 4
A
1269 1270anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 813first strand
Strand 2
A
862 867anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 885first strand
Strand 2
A
960 962parallel
Strand 3
A
990 994parallel
Strand 4
A
836 840parallel
Strand 5
A
1008 1011parallel
Strand 6
A
1016 1020anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1093first strand
Strand 2
A
1098 1103anti-parallel
Strand 3
A
1033 1038anti-parallel
Strand 4
A
1132 1135anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1280 1282first strand
Strand 2
A
1378 1380parallel
Strand 3
A
1371 1373anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1810 1817first strand
Strand 2
A
1793 1800anti-parallel
Strand 3
A
1848 1853anti-parallel
Strand 4
A
1856 1857anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1869 1872first strand
Strand 2
A
1946 1950parallel
Strand 3
A
1977 1981parallel
Strand 4
A
1823 1826parallel
Strand 5
A
1994 1997parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2046 2048first strand
Strand 2
A
2054 2058anti-parallel
Strand 3
A
2020 2025anti-parallel
Strand 4
A
2086 2090anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il