Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EE0 entry

There are 3 chains in PDB entry 8EE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PRO 910
L	ASP 17	PHE 231
H	GLU 3	PRO 220

There are 42 helices in PDB entry 8EE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	33	Right-handed alpha
Helix 2	AA2	A	50	60	Right-handed alpha
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	109	115	Right-handed alpha
Helix 5	AA5	A	117	134	Right-handed alpha
Helix 6	AA6	A	137	142	Right-handed 310
Helix 7	AA7	A	177	190	Right-handed alpha
Helix 8	AA8	A	200	202	Right-handed 310
Helix 9	AA9	A	203	218	Right-handed alpha
Helix 10	AB1	A	235	245	Right-handed alpha
Helix 11	AB2	A	277	283	Right-handed alpha
Helix 12	AB3	A	309	325	Right-handed alpha
Helix 13	AB4	A	327	331	Right-handed 310
Helix 14	AB5	A	343	356	Right-handed alpha
Helix 15	AB6	A	371	376	Right-handed alpha
Helix 16	AB7	A	378	380	Right-handed 310
Helix 17	AB8	A	381	397	Right-handed alpha
Helix 18	AB9	A	484	502	Right-handed alpha
Helix 19	AC1	A	506	517	Right-handed alpha
Helix 20	AC2	A	531	544	Right-handed alpha
Helix 21	AC3	A	582	600	Right-handed alpha
Helix 22	AC4	A	603	609	Right-handed alpha
Helix 23	AC5	A	619	641	Right-handed alpha
Helix 24	AC6	A	654	662	Right-handed alpha
Helix 25	AC7	A	666	684	Right-handed alpha
Helix 26	AC8	A	697	705	Right-handed alpha
Helix 27	AC9	A	730	742	Right-handed alpha
Helix 28	AD1	A	758	763	Right-handed 310
Helix 29	AD2	A	764	772	Right-handed alpha
Helix 30	AD3	A	799	809	Right-handed alpha
Helix 31	AD4	A	813	822	Right-handed alpha
Helix 32	AD5	A	837	848	Right-handed alpha
Helix 33	AD6	A	864	877	Right-handed alpha
Helix 34	AD7	A	883	889	Right-handed alpha
Helix 35	AD8	L	100	104	Right-handed 310
Helix 36	AD9	L	143	148	Right-handed alpha
Helix 37	AE1	L	205	210	Right-handed alpha
Helix 38	AE2	H	30	34	Right-handed 310
Helix 39	AE3	H	55	59	Right-handed 310
Helix 40	AE4	H	66	69	Right-handed 310
Helix 41	AE5	H	91	95	Right-handed 310
Helix 42	AE6	H	208	211	Right-handed 310

There are 17 sheets in PDB entry 8EE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	198	first strand
Strand 2	A	146	151	parallel
Strand 3	A	223	230	parallel
Strand 4	A	268	276	anti-parallel
Strand 5	A	35	43	anti-parallel
Strand 6	A	289	298	anti-parallel
Strand 7	A	448	455	anti-parallel
Strand 8	A	437	443	anti-parallel
Strand 9	A	333	335	parallel
Strand 10	A	366	369	parallel
Strand 11	A	419	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	91	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	904	905	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	482	first strand
Strand 2	A	523	529	anti-parallel
Strand 3	A	551	555	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	650	first strand
Strand 2	A	561	565	parallel
Strand 3	A	827	830	parallel
Strand 4	A	853	855	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	750	first strand
Strand 2	A	690	694	anti-parallel
Strand 3	A	724	726	anti-parallel
Strand 4	A	715	718	anti-parallel
Strand 5	A	811	812	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	791	793	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	22	first strand
Strand 2	L	35	41	anti-parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	83	88	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	29	first strand
Strand 2	L	124	128	parallel
Strand 3	L	105	111	anti-parallel
Strand 4	L	54	59	anti-parallel
Strand 5	L	65	70	anti-parallel
Strand 6	L	74	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	185	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	176	first strand
Strand 2	L	167	172	anti-parallel
Strand 3	L	214	219	anti-parallel
Strand 4	L	227	230	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	36	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	143	152	anti-parallel
Strand 3	H	183	191	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	143	152	anti-parallel
Strand 3	H	183	191	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	207	anti-parallel
Strand 3	H	212	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE0