Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EE1 entry

There are 6 chains in PDB entry 8EE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 33	LEU 908
B	GLN 3	CYS 223
C	GLU 17	SER 225
D	GLU 29	LEU 908
G	GLN 3	LYS 217
H	GLU 17	SER 194

There are 82 helices in PDB entry 8EE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	60	Right-handed alpha
Helix 2	AA2	A	109	116	Right-handed alpha
Helix 3	AA3	A	117	134	Right-handed alpha
Helix 4	AA4	A	137	142	Right-handed 310
Helix 5	AA5	A	163	167	Right-handed 310
Helix 6	AA6	A	177	190	Right-handed alpha
Helix 7	AA7	A	200	202	Right-handed 310
Helix 8	AA8	A	203	218	Right-handed alpha
Helix 9	AA9	A	235	245	Right-handed alpha
Helix 10	AB1	A	277	283	Right-handed alpha
Helix 11	AB2	A	309	325	Right-handed alpha
Helix 12	AB3	A	327	331	Right-handed 310
Helix 13	AB4	A	343	356	Right-handed alpha
Helix 14	AB5	A	371	376	Right-handed alpha
Helix 15	AB6	A	378	380	Right-handed 310
Helix 16	AB7	A	381	397	Right-handed alpha
Helix 17	AB8	A	484	502	Right-handed alpha
Helix 18	AB9	A	506	517	Right-handed alpha
Helix 19	AC1	A	531	545	Right-handed alpha
Helix 20	AC2	A	576	580	Right-handed 310
Helix 21	AC3	A	582	598	Right-handed alpha
Helix 22	AC4	A	619	641	Right-handed alpha
Helix 23	AC5	A	653	662	Right-handed alpha
Helix 24	AC6	A	666	684	Right-handed alpha
Helix 25	AC7	A	729	744	Right-handed alpha
Helix 26	AC8	A	761	765	Right-handed 310
Helix 27	AC9	A	767	772	Right-handed alpha
Helix 28	AD1	A	794	798	Right-handed 310
Helix 29	AD2	A	799	809	Right-handed alpha
Helix 30	AD3	A	812	823	Right-handed alpha
Helix 31	AD4	A	837	848	Right-handed alpha
Helix 32	AD5	A	864	879	Right-handed alpha
Helix 33	AD6	A	884	889	Right-handed alpha
Helix 34	AD7	B	88	92	Right-handed 310
Helix 35	AD8	B	163	165	Right-handed 310
Helix 36	AD9	B	194	196	Right-handed 310
Helix 37	AE1	B	208	211	Right-handed 310
Helix 38	AE2	C	46	48	Right-handed 310
Helix 39	AE3	C	96	100	Right-handed 310
Helix 40	AE4	C	138	145	Right-handed alpha
Helix 41	AE5	C	202	206	Right-handed alpha
Helix 42	AE6	D	50	61	Right-handed alpha
Helix 43	AE7	D	69	73	Right-handed 310
Helix 44	AE8	D	103	107	Right-handed 310
Helix 45	AE9	D	109	116	Right-handed alpha
Helix 46	AF1	D	117	134	Right-handed alpha
Helix 47	AF2	D	137	142	Right-handed 310
Helix 48	AF3	D	163	167	Right-handed 310
Helix 49	AF4	D	171	177	Right-handed alpha
Helix 50	AF5	D	177	190	Right-handed alpha
Helix 51	AF6	D	200	202	Right-handed 310
Helix 52	AF7	D	203	218	Right-handed alpha
Helix 53	AF8	D	235	245	Right-handed alpha
Helix 54	AF9	D	277	283	Right-handed alpha
Helix 55	AG1	D	309	325	Right-handed alpha
Helix 56	AG2	D	327	331	Right-handed 310
Helix 57	AG3	D	343	355	Right-handed alpha
Helix 58	AG4	D	371	376	Right-handed alpha
Helix 59	AG5	D	378	380	Right-handed 310
Helix 60	AG6	D	381	397	Right-handed alpha
Helix 61	AG7	D	484	502	Right-handed alpha
Helix 62	AG8	D	506	517	Right-handed alpha
Helix 63	AG9	D	531	545	Right-handed alpha
Helix 64	AH1	D	576	580	Right-handed 310
Helix 65	AH2	D	582	601	Right-handed alpha
Helix 66	AH3	D	619	641	Right-handed alpha
Helix 67	AH4	D	653	662	Right-handed alpha
Helix 68	AH5	D	666	679	Right-handed alpha
Helix 69	AH6	D	681	685	Right-handed 310
Helix 70	AH7	D	729	741	Right-handed alpha
Helix 71	AH8	D	758	762	Right-handed 310
Helix 72	AH9	D	766	772	Right-handed alpha
Helix 73	AI1	D	794	798	Right-handed 310
Helix 74	AI2	D	799	809	Right-handed alpha
Helix 75	AI3	D	812	823	Right-handed alpha
Helix 76	AI4	D	837	848	Right-handed alpha
Helix 77	AI5	D	864	879	Right-handed alpha
Helix 78	AI6	D	883	888	Right-handed alpha
Helix 79	AI7	G	65	67	Right-handed 310
Helix 80	AI8	G	209	211	Right-handed 310
Helix 81	AI9	H	46	48	Right-handed 310
Helix 82	AJ1	H	96	100	Right-handed 310

There are 32 sheets in PDB entry 8EE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	198	first strand
Strand 2	A	146	151	parallel
Strand 3	A	223	230	parallel
Strand 4	A	268	276	anti-parallel
Strand 5	A	35	43	anti-parallel
Strand 6	A	289	298	anti-parallel
Strand 7	A	448	455	anti-parallel
Strand 8	A	437	443	anti-parallel
Strand 9	A	333	335	parallel
Strand 10	A	366	369	parallel
Strand 11	A	419	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	904	905	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	426	427	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	482	first strand
Strand 2	A	523	529	anti-parallel
Strand 3	A	551	555	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	650	first strand
Strand 2	A	561	565	parallel
Strand 3	A	827	830	parallel
Strand 4	A	853	855	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	720	first strand
Strand 2	A	723	728	anti-parallel
Strand 3	A	689	694	anti-parallel
Strand 4	A	747	749	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	791	793	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	19	27	anti-parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	70	74	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	114	118	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	114	118	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	107	110	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	187	192	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	212	217	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	35	45	anti-parallel
Strand 3	C	79	92	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	119	123	parallel
Strand 3	C	102	107	anti-parallel
Strand 4	C	50	55	anti-parallel
Strand 5	C	62	66	anti-parallel
Strand 6	C	70	71	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	119	123	parallel
Strand 3	C	102	107	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	149	156	anti-parallel
Strand 3	C	190	196	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	209	213	anti-parallel
Strand 4	C	222	224	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	198	first strand
Strand 2	D	147	151	parallel
Strand 3	D	224	230	parallel
Strand 4	D	268	276	anti-parallel
Strand 5	D	35	43	anti-parallel
Strand 6	D	289	298	anti-parallel
Strand 7	D	448	455	anti-parallel
Strand 8	D	437	443	anti-parallel
Strand 9	D	333	335	parallel
Strand 10	D	366	369	parallel
Strand 11	D	419	421	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	904	905	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	426	427	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	482	first strand
Strand 2	D	523	529	anti-parallel
Strand 3	D	551	555	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	650	first strand
Strand 2	D	561	565	parallel
Strand 3	D	827	830	parallel
Strand 4	D	853	855	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	713	720	first strand
Strand 2	D	723	728	anti-parallel
Strand 3	D	689	694	anti-parallel
Strand 4	D	747	750	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	785	786	first strand
Strand 2	D	791	792	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	10	first strand
Strand 2	G	20	27	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	14	first strand
Strand 2	G	114	118	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	35	41	anti-parallel
Strand 5	G	48	53	anti-parallel
Strand 6	G	59	61	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	14	first strand
Strand 2	G	114	118	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	107	110	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	158	first strand
Strand 2	G	206	207	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	177	first strand
Strand 2	G	183	184	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	23	first strand
Strand 2	H	35	41	anti-parallel
Strand 3	H	87	92	anti-parallel
Strand 4	H	79	84	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	119	123	parallel
Strand 3	H	102	107	anti-parallel
Strand 4	H	50	55	anti-parallel
Strand 5	H	62	66	anti-parallel
Strand 6	H	70	71	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	119	123	parallel
Strand 3	H	102	107	anti-parallel
Strand 4	H	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE1