Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EE2 entry

There are 6 chains in PDB entry 8EE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	ARG 317
B	ALA 25	ARG 317
C	VAL 4	VAL 120
D	ALA 2	SER 121
E	GLU 26	SER 316
F	ALA 25	SER 179

There are105 helices in PDB entry 8EE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	71	Right-handed 310
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	102	118	Right-handed alpha
Helix 4	AA4	A	129	134	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	158	164	Right-handed 310
Helix 7	AA7	A	176	183	Right-handed alpha
Helix 8	AA8	A	186	193	Right-handed alpha
Helix 9	AA9	A	195	208	Right-handed alpha
Helix 10	AB1	A	210	214	Right-handed 310
Helix 11	AB2	A	215	227	Right-handed alpha
Helix 12	AB3	A	228	241	Right-handed alpha
Helix 13	AB4	A	241	253	Right-handed alpha
Helix 14	AB5	A	274	284	Right-handed alpha
Helix 15	AB6	A	298	303	Right-handed alpha
Helix 16	AB7	A	303	316	Right-handed alpha
Helix 17	AB8	B	66	71	Right-handed 310
Helix 18	AB9	B	73	78	Right-handed alpha
Helix 19	AC1	B	102	118	Right-handed alpha
Helix 20	AC2	B	129	134	Right-handed alpha
Helix 21	AC3	B	135	142	Right-handed alpha
Helix 22	AC4	B	158	164	Right-handed 310
Helix 23	AC5	B	176	183	Right-handed alpha
Helix 24	AC6	B	186	193	Right-handed alpha
Helix 25	AC7	B	195	207	Right-handed alpha
Helix 26	AC8	B	215	228	Right-handed alpha
Helix 27	AC9	B	228	241	Right-handed alpha
Helix 28	AD1	B	241	253	Right-handed alpha
Helix 29	AD2	B	274	283	Right-handed alpha
Helix 30	AD3	B	298	303	Right-handed alpha
Helix 31	AD4	B	303	316	Right-handed alpha
Helix 32	AD5	C	29	33	Right-handed 310
Helix 33	AD6	C	88	92	Right-handed 310
Helix 34	AD7	D	29	33	Right-handed 310
Helix 35	AD8	D	88	92	Right-handed 310
Helix 36	AD9	E	66	71	Right-handed 310
Helix 37	AE1	E	73	78	Right-handed alpha
Helix 38	AE2	E	102	116	Right-handed alpha
Helix 39	AE3	E	129	134	Right-handed alpha
Helix 40	AE4	E	135	142	Right-handed alpha
Helix 41	AE5	E	158	163	Right-handed 310
Helix 42	AE6	E	176	183	Right-handed alpha
Helix 43	AE7	E	186	193	Right-handed alpha
Helix 44	AE8	E	195	207	Right-handed alpha
Helix 45	AE9	E	210	214	Right-handed 310
Helix 46	AF1	E	215	227	Right-handed alpha
Helix 47	AF2	E	228	241	Right-handed alpha
Helix 48	AF3	E	241	253	Right-handed alpha
Helix 49	AF4	E	274	284	Right-handed alpha
Helix 50	AF5	E	298	303	Right-handed alpha
Helix 51	AF6	E	303	316	Right-handed alpha
Helix 52	AF7	F	66	71	Right-handed 310
Helix 53	AF8	F	73	78	Right-handed alpha
Helix 54	AF9	F	102	116	Right-handed alpha
Helix 55	AG1	F	129	134	Right-handed alpha
Helix 56	AG2	F	135	142	Right-handed alpha
Helix 57	AG3	F	158	164	Right-handed 310
Helix 58	AG4	F	176	183	Right-handed alpha
Helix 59	AG5	F	186	193	Right-handed alpha
Helix 60	AG6	F	195	207	Right-handed alpha
Helix 61	AG7	F	215	228	Right-handed alpha
Helix 62	AG8	F	228	241	Right-handed alpha
Helix 63	AG9	F	241	253	Right-handed alpha
Helix 64	AH1	F	274	283	Right-handed alpha
Helix 65	AH2	F	298	303	Right-handed alpha
Helix 66	AH3	F	303	316	Right-handed alpha
Helix 67	AH4	G	29	33	Right-handed 310
Helix 68	AH5	H	29	33	Right-handed 310
Helix 69	AH6	H	88	92	Right-handed 310
Helix 70	AH7	I	66	71	Right-handed 310
Helix 71	AH8	I	73	78	Right-handed alpha
Helix 72	AH9	I	102	116	Right-handed alpha
Helix 73	AI1	I	129	134	Right-handed alpha
Helix 74	AI2	I	135	142	Right-handed alpha
Helix 75	AI3	I	158	164	Right-handed 310
Helix 76	AI4	I	176	183	Right-handed alpha
Helix 77	AI5	I	186	193	Right-handed alpha
Helix 78	AI6	I	195	207	Right-handed alpha
Helix 79	AI7	I	210	214	Right-handed 310
Helix 80	AI8	I	215	228	Right-handed alpha
Helix 81	AI9	I	228	241	Right-handed alpha
Helix 82	AJ1	I	241	253	Right-handed alpha
Helix 83	AJ2	I	274	284	Right-handed alpha
Helix 84	AJ3	I	298	303	Right-handed alpha
Helix 85	AJ4	I	303	316	Right-handed alpha
Helix 86	AJ5	J	66	71	Right-handed 310
Helix 87	AJ6	J	73	78	Right-handed alpha
Helix 88	AJ7	J	102	118	Right-handed alpha
Helix 89	AJ8	J	129	134	Right-handed alpha
Helix 90	AJ9	J	135	142	Right-handed alpha
Helix 91	AK1	J	158	164	Right-handed 310
Helix 92	AK2	J	176	183	Right-handed alpha
Helix 93	AK3	J	186	193	Right-handed alpha
Helix 94	AK4	J	195	207	Right-handed alpha
Helix 95	AK5	J	210	214	Right-handed 310
Helix 96	AK6	J	215	227	Right-handed alpha
Helix 97	AK7	J	228	241	Right-handed alpha
Helix 98	AK8	J	241	253	Right-handed alpha
Helix 99	AK9	J	274	284	Right-handed alpha
Helix 100	AL1	J	298	303	Right-handed alpha
Helix 101	AL2	J	303	316	Right-handed alpha
Helix 102	AL3	K	29	33	Right-handed 310
Helix 103	AL4	K	88	92	Right-handed 310
Helix 104	AL5	L	29	33	Right-handed 310
Helix 105	AL6	L	88	92	Right-handed 310

There are 29 sheets in PDB entry 8EE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	44	52	anti-parallel
Strand 3	A	82	86	anti-parallel
Strand 4	A	56	60	parallel
Strand 5	A	123	128	parallel
Strand 6	A	146	152	parallel
Strand 7	A	261	266	parallel
Strand 8	A	287	292	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	171	172	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	41	first strand
Strand 2	B	44	52	anti-parallel
Strand 3	B	82	86	anti-parallel
Strand 4	B	56	60	parallel
Strand 5	B	123	128	parallel
Strand 6	B	146	152	parallel
Strand 7	B	257	266	parallel
Strand 8	B	284	292	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	171	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	48	54	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	C	93	102	anti-parallel
Strand 5	C	108	112	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	48	54	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	C	93	102	anti-parallel
Strand 5	C	116	118	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	116	120	parallel
Strand 3	D	93	102	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	59	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	116	120	parallel
Strand 3	D	93	102	anti-parallel
Strand 4	D	108	112	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	41	first strand
Strand 2	E	44	52	anti-parallel
Strand 3	E	82	86	anti-parallel
Strand 4	E	56	60	parallel
Strand 5	E	123	128	parallel
Strand 6	E	146	152	parallel
Strand 7	E	261	266	parallel
Strand 8	E	287	292	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	171	172	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	41	first strand
Strand 2	F	44	52	anti-parallel
Strand 3	F	82	86	anti-parallel
Strand 4	F	56	60	parallel
Strand 5	F	123	128	parallel
Strand 6	F	146	152	parallel
Strand 7	F	257	266	parallel
Strand 8	F	284	292	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	168	first strand
Strand 2	F	171	172	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	9	first strand
Strand 2	G	21	26	anti-parallel
Strand 3	G	79	83	anti-parallel
Strand 4	G	70	74	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	51	54	anti-parallel
Strand 3	G	35	39	anti-parallel
Strand 4	G	96	102	anti-parallel
Strand 5	G	108	112	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	9	first strand
Strand 2	H	20	26	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	116	120	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	116	120	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	108	112	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	41	first strand
Strand 2	I	44	52	anti-parallel
Strand 3	I	82	86	anti-parallel
Strand 4	I	56	60	parallel
Strand 5	I	123	128	parallel
Strand 6	I	146	152	parallel
Strand 7	I	261	266	parallel
Strand 8	I	287	292	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	168	first strand
Strand 2	I	171	172	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	41	first strand
Strand 2	J	44	52	anti-parallel
Strand 3	J	82	86	anti-parallel
Strand 4	J	56	60	parallel
Strand 5	J	123	128	parallel
Strand 6	J	146	152	parallel
Strand 7	J	261	266	parallel
Strand 8	J	287	292	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	167	168	first strand
Strand 2	J	171	172	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	9	first strand
Strand 2	K	20	26	anti-parallel
Strand 3	K	79	84	anti-parallel
Strand 4	K	69	74	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	61	first strand
Strand 2	K	47	54	anti-parallel
Strand 3	K	35	41	anti-parallel
Strand 4	K	93	102	anti-parallel
Strand 5	K	108	112	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	61	first strand
Strand 2	K	47	54	anti-parallel
Strand 3	K	35	41	anti-parallel
Strand 4	K	93	102	anti-parallel
Strand 5	K	116	118	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	9	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	79	84	anti-parallel
Strand 4	L	69	74	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	116	120	parallel
Strand 3	L	93	102	anti-parallel
Strand 4	L	35	41	anti-parallel
Strand 5	L	48	54	anti-parallel
Strand 6	L	59	61	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	116	120	parallel
Strand 3	L	93	102	anti-parallel
Strand 4	L	108	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE2