Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EE4 entry

There are 6 chains in PDB entry 8EE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 382
B	MET 1	LEU 382
C	MET 1	ASP 411
D	MET 1	PRO 404
E	MET 1	LYS 407
F	MET 1	VAL 406

There are106 helices in PDB entry 8EE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	54	60	Right-handed 310
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	68	72	Right-handed 310
Helix 5	AA5	A	118	136	Right-handed alpha
Helix 6	AA6	A	153	157	Right-handed 310
Helix 7	AA7	A	173	184	Right-handed 310
Helix 8	AA8	A	192	217	Right-handed alpha
Helix 9	AA9	A	224	251	Right-handed alpha
Helix 10	AB1	A	278	280	Right-handed 310
Helix 11	AB2	A	281	302	Right-handed alpha
Helix 12	AB3	A	308	313	Right-handed alpha
Helix 13	AB4	A	327	332	Right-handed alpha
Helix 14	AB5	A	333	342	Right-handed alpha
Helix 15	AB6	A	353	358	Right-handed 310
Helix 16	AB7	A	361	363	Right-handed 310
Helix 17	AB8	B	35	53	Right-handed alpha
Helix 18	AB9	B	54	60	Right-handed 310
Helix 19	AC1	B	62	66	Right-handed 310
Helix 20	AC2	B	68	72	Right-handed 310
Helix 21	AC3	B	118	136	Right-handed alpha
Helix 22	AC4	B	153	157	Right-handed 310
Helix 23	AC5	B	173	178	Right-handed 310
Helix 24	AC6	B	179	184	Right-handed 310
Helix 25	AC7	B	192	217	Right-handed alpha
Helix 26	AC8	B	225	251	Right-handed alpha
Helix 27	AC9	B	278	280	Right-handed 310
Helix 28	AD1	B	281	302	Right-handed alpha
Helix 29	AD2	B	303	306	Right-handed 310
Helix 30	AD3	B	308	313	Right-handed alpha
Helix 31	AD4	B	327	332	Right-handed alpha
Helix 32	AD5	B	333	342	Right-handed alpha
Helix 33	AD6	B	353	358	Right-handed 310
Helix 34	AD7	B	361	363	Right-handed 310
Helix 35	AD8	C	34	47	Right-handed alpha
Helix 36	AD9	C	47	52	Right-handed alpha
Helix 37	AE1	C	53	60	Right-handed 310
Helix 38	AE2	C	68	72	Right-handed 310
Helix 39	AE3	C	118	137	Right-handed alpha
Helix 40	AE4	C	180	184	Right-handed 310
Helix 41	AE5	C	193	217	Right-handed alpha
Helix 42	AE6	C	218	221	Right-handed 310
Helix 43	AE7	C	225	251	Right-handed alpha
Helix 44	AE8	C	278	280	Right-handed 310
Helix 45	AE9	C	281	302	Right-handed alpha
Helix 46	AF1	C	308	313	Right-handed alpha
Helix 47	AF2	C	327	332	Right-handed alpha
Helix 48	AF3	C	333	342	Right-handed alpha
Helix 49	AF4	C	353	358	Right-handed alpha
Helix 50	AF5	C	359	360	Right-handed 310
Helix 51	AF6	C	361	363	Right-handed 310
Helix 52	AF7	C	389	397	Right-handed alpha
Helix 53	AF8	C	406	411	Right-handed 310
Helix 54	AF9	D	35	53	Right-handed alpha
Helix 55	AG1	D	54	60	Right-handed 310
Helix 56	AG2	D	78	81	Right-handed 310
Helix 57	AG3	D	118	137	Right-handed alpha
Helix 58	AG4	D	175	181	Right-handed alpha
Helix 59	AG5	D	182	184	Right-handed 310
Helix 60	AG6	D	193	217	Right-handed alpha
Helix 61	AG7	D	226	247	Right-handed alpha
Helix 62	AG8	D	278	280	Right-handed 310
Helix 63	AG9	D	281	302	Right-handed alpha
Helix 64	AH1	D	308	313	Right-handed alpha
Helix 65	AH2	D	329	332	Right-handed 310
Helix 66	AH3	D	333	342	Right-handed alpha
Helix 67	AH4	D	353	358	Right-handed alpha
Helix 68	AH5	D	359	360	Right-handed 310
Helix 69	AH6	D	361	363	Right-handed 310
Helix 70	AH7	D	389	397	Right-handed alpha
Helix 71	AH8	E	35	53	Right-handed alpha
Helix 72	AH9	E	62	66	Right-handed 310
Helix 73	AI1	E	68	72	Right-handed 310
Helix 74	AI2	E	118	137	Right-handed alpha
Helix 75	AI3	E	180	184	Right-handed 310
Helix 76	AI4	E	192	217	Right-handed alpha
Helix 77	AI5	E	220	247	Right-handed alpha
Helix 78	AI6	E	259	262	Right-handed 310
Helix 79	AI7	E	278	280	Right-handed 310
Helix 80	AI8	E	281	302	Right-handed alpha
Helix 81	AI9	E	303	306	Right-handed 310
Helix 82	AJ1	E	308	313	Right-handed alpha
Helix 83	AJ2	E	327	332	Right-handed alpha
Helix 84	AJ3	E	333	342	Right-handed alpha
Helix 85	AJ4	E	353	358	Right-handed alpha
Helix 86	AJ5	E	359	360	Right-handed 310
Helix 87	AJ6	E	361	363	Right-handed 310
Helix 88	AJ7	E	389	398	Right-handed alpha
Helix 89	AJ8	F	36	47	Right-handed alpha
Helix 90	AJ9	F	48	52	Right-handed 310
Helix 91	AK1	F	62	66	Right-handed 310
Helix 92	AK2	F	68	72	Right-handed 310
Helix 93	AK3	F	118	136	Right-handed alpha
Helix 94	AK4	F	178	184	Right-handed 310
Helix 95	AK5	F	192	217	Right-handed alpha
Helix 96	AK6	F	218	224	Right-handed 310
Helix 97	AK7	F	225	247	Right-handed alpha
Helix 98	AK8	F	278	280	Right-handed 310
Helix 99	AK9	F	281	302	Right-handed alpha
Helix 100	AL1	F	308	313	Right-handed alpha
Helix 101	AL2	F	329	332	Right-handed 310
Helix 102	AL3	F	333	342	Right-handed alpha
Helix 103	AL4	F	353	358	Right-handed alpha
Helix 104	AL5	F	359	360	Right-handed 310
Helix 105	AL6	F	361	363	Right-handed 310
Helix 106	AL7	F	389	399	Right-handed alpha

There are 24 sheets in PDB entry 8EE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	20	first strand
Strand 2	A	3	11	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	102	109	anti-parallel
Strand 5	A	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	315	319	parallel
Strand 3	A	345	351	parallel
Strand 4	A	25	29	parallel
Strand 5	A	365	370	parallel
Strand 6	A	376	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	82	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	3	9	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	102	109	anti-parallel
Strand 5	B	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	315	319	parallel
Strand 3	B	345	351	parallel
Strand 4	B	25	29	parallel
Strand 5	B	365	369	parallel
Strand 6	B	377	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	82	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	264	268	anti-parallel
Strand 3	B	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	89	97	anti-parallel
Strand 4	C	101	109	anti-parallel
Strand 5	C	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	315	319	parallel
Strand 3	C	346	350	parallel
Strand 4	C	25	29	parallel
Strand 5	C	365	370	parallel
Strand 6	C	376	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	85	86	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	258	first strand
Strand 2	C	264	269	anti-parallel
Strand 3	C	273	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	6	8	anti-parallel
Strand 3	D	89	93	anti-parallel
Strand 4	D	105	109	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	152	first strand
Strand 2	D	314	320	parallel
Strand 3	D	345	350	parallel
Strand 4	D	25	28	parallel
Strand 5	D	365	370	parallel
Strand 6	D	376	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	82	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	258	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	273	276	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	2	9	anti-parallel
Strand 3	E	89	98	anti-parallel
Strand 4	E	101	109	anti-parallel
Strand 5	E	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	152	first strand
Strand 2	E	315	320	parallel
Strand 3	E	345	350	parallel
Strand 4	E	25	29	parallel
Strand 5	E	365	370	parallel
Strand 6	E	376	379	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	258	first strand
Strand 2	E	264	269	anti-parallel
Strand 3	E	273	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	2	9	anti-parallel
Strand 3	F	89	98	anti-parallel
Strand 4	F	101	109	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	152	first strand
Strand 2	F	314	320	parallel
Strand 3	F	345	351	parallel
Strand 4	F	25	29	parallel
Strand 5	F	365	369	parallel
Strand 6	F	377	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	83	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	258	first strand
Strand 2	F	264	269	anti-parallel
Strand 3	F	273	276	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE4