Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EE5 entry

There are 3 chains in PDB entry 8EE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Z
 ILE 1SER 403
H
 GLU 1GLU 211
L
 SER 1ALA 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8EE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Z
215 220Right-handed alpha
Helix 2
AA2
Z
238 241Right-handed 310
Helix 3
AA3
Z
261 268Right-handed alpha
Helix 4
AA4
H
83 87Right-handed 310
Helix 5
AA5
H
186 188Right-handed 310
Helix 6
AA6
L
79 83Right-handed 310
Helix 7
AA7
L
122 128Right-handed alpha
Helix 8
AA8
L
182 187Right-handed alpha
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There are 18 sheets in PDB entry 8EE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
8 13first strand
Strand 2
Z
29 34parallel
Strand 3
Z
41 49anti-parallel
Strand 4
Z
136 143anti-parallel
Strand 5
Z
164 169anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
20 25first strand
Strand 2
Z
289 294anti-parallel
Strand 3
Z
184 190anti-parallel
Strand 4
Z
178 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
90 98first strand
Strand 2
Z
110 129anti-parallel
Strand 3
Z
55 73anti-parallel
Strand 4
Z
225 226anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
90 98first strand
Strand 2
Z
110 129anti-parallel
Strand 3
Z
201 205anti-parallel
Strand 4
Z
210 214anti-parallel
Strand 5
Z
273 278anti-parallel
Strand 6
Z
281 283anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
243 246first strand
Strand 2
Z
254 257anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
312 320first strand
Strand 2
Z
326 333anti-parallel
Strand 3
Z
371 379anti-parallel
Strand 4
Z
357 358anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
343 346first strand
Strand 2
Z
385 389anti-parallel
Strand 3
Z
396 400anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
71 72anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
134 144anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
163 164anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 153first strand
Strand 2
H
194 199anti-parallel
Strand 3
H
204 209anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
96 98anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
160 162anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
166 167anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 197anti-parallel
Strand 4
L
202 207anti-parallel
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