Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EE7 entry

There are 3 chains in PDB entry 8EE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 462
B
 MET 1LEU 460
C
 MET 1ALA 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8EE7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 47Right-handed alpha
Helix 2
AA2
A
47 53Right-handed alpha
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
68 72Right-handed 310
Helix 6
AA6
A
118 137Right-handed alpha
Helix 7
AA7
A
175 180Right-handed alpha
Helix 8
AA8
A
181 184Right-handed 310
Helix 9
AA9
A
192 217Right-handed alpha
Helix 10
AB1
A
220 251Right-handed alpha
Helix 11
AB2
A
278 280Right-handed 310
Helix 12
AB3
A
281 302Right-handed alpha
Helix 13
AB4
A
327 332Right-handed alpha
Helix 14
AB5
A
333 342Right-handed alpha
Helix 15
AB6
A
353 358Right-handed alpha
Helix 16
AB7
A
359 360Right-handed 310
Helix 17
AB8
A
361 363Right-handed 310
Helix 18
AB9
A
389 397Right-handed alpha
Helix 19
AC1
A
408 421Right-handed alpha
Helix 20
AC2
A
426 441Right-handed alpha
Helix 21
AC3
A
444 461Right-handed alpha
Helix 22
AC4
B
35 47Right-handed alpha
Helix 23
AC5
B
47 52Right-handed alpha
Helix 24
AC6
B
62 66Right-handed 310
Helix 25
AC7
B
68 72Right-handed 310
Helix 26
AC8
B
118 136Right-handed alpha
Helix 27
AC9
B
175 181Right-handed alpha
Helix 28
AD1
B
182 184Right-handed 310
Helix 29
AD2
B
192 217Right-handed alpha
Helix 30
AD3
B
225 247Right-handed alpha
Helix 31
AD4
B
278 280Right-handed 310
Helix 32
AD5
B
281 302Right-handed alpha
Helix 33
AD6
B
303 307Right-handed 310
Helix 34
AD7
B
308 313Right-handed alpha
Helix 35
AD8
B
334 342Right-handed alpha
Helix 36
AD9
B
353 358Right-handed alpha
Helix 37
AE1
B
359 360Right-handed 310
Helix 38
AE2
B
361 363Right-handed 310
Helix 39
AE3
B
389 397Right-handed alpha
Helix 40
AE4
B
408 421Right-handed alpha
Helix 41
AE5
B
426 441Right-handed alpha
Helix 42
AE6
B
444 457Right-handed alpha
Helix 43
AE7
C
11 18Right-handed alpha
Helix 44
AE8
C
24 35Right-handed alpha
Helix 45
AE9
C
38 50Right-handed alpha
Helix 46
AF1
C
60 65Right-handed alpha
Helix 47
AF2
C
79 83Right-handed 310
Helix 48
AF3
C
85 87Right-handed 310
Helix 49
AF4
C
111 114Right-handed 310
Helix 50
AF5
C
115 121Right-handed alpha
Helix 51
AF6
C
135 137Right-handed 310
Helix 52
AF7
C
156 168Right-handed alpha
Helix 53
AF8
C
172 197Right-handed alpha
Helix 54
AF9
C
203 209Right-handed alpha
Helix 55
AG1
C
219 227Right-handed alpha
Helix 56
AG2
C
227 238Right-handed alpha
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There are 10 sheets in PDB entry 8EE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
102 109anti-parallel
Strand 5
A
116 117anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
315 319parallel
Strand 3
A
345 350parallel
Strand 4
A
25 29parallel
Strand 5
A
365 370parallel
Strand 6
A
376 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
84 86anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
273 276anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
2 9anti-parallel
Strand 3
B
89 96anti-parallel
Strand 4
B
102 109anti-parallel
Strand 5
B
116 117anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
315 319parallel
Strand 3
B
345 351parallel
Strand 4
B
25 29parallel
Strand 5
B
365 369parallel
Strand 6
B
377 379anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
82 86anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 258first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
273 276anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
89 93anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 141first strand
Strand 2
C
147 149anti-parallel
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