Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EE8 entry

There are 5 chains in PDB entry 8EE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Z	ARG 2	SER 403
H	VAL 2	VAL 219
L	SER 1	ALA 217
E	ILE 1	SER 403
B	ARG 2	LYS 84

There are 38 helices in PDB entry 8EE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Z	148	152	Right-handed 310
Helix 2	AA2	Z	181	183	Right-handed 310
Helix 3	AA3	Z	215	220	Right-handed alpha
Helix 4	AA4	Z	238	241	Right-handed 310
Helix 5	AA5	Z	261	269	Right-handed alpha
Helix 6	AA6	H	28	32	Right-handed 310
Helix 7	AA7	H	87	91	Right-handed 310
Helix 8	AA8	H	164	166	Right-handed 310
Helix 9	AA9	H	195	197	Right-handed 310
Helix 10	AB1	H	209	212	Right-handed 310
Helix 11	AB2	L	28	32	Right-handed 310
Helix 12	AB3	L	86	90	Right-handed 310
Helix 13	AB4	L	129	134	Right-handed alpha
Helix 14	AB5	L	190	196	Right-handed alpha
Helix 15	AB6	E	100	104	Right-handed 310
Helix 16	AB7	E	215	220	Right-handed alpha
Helix 17	AB8	E	238	241	Right-handed 310
Helix 18	AB9	E	261	269	Right-handed alpha
Helix 19	AC1	B	148	152	Right-handed 310
Helix 20	AC2	B	181	183	Right-handed 310
Helix 21	AC3	B	197	199	Right-handed 310
Helix 22	AC4	B	215	220	Right-handed alpha
Helix 23	AC5	B	238	241	Right-handed 310
Helix 24	AC6	B	261	269	Right-handed alpha
Helix 25	AC7	C	28	32	Right-handed 310
Helix 26	AC8	C	86	90	Right-handed 310
Helix 27	AC9	C	129	134	Right-handed alpha
Helix 28	AD1	C	190	196	Right-handed alpha
Helix 29	AD2	A	131	133	Right-handed 310
Helix 30	AD3	A	148	152	Right-handed 310
Helix 31	AD4	A	181	183	Right-handed 310
Helix 32	AD5	A	214	220	Right-handed alpha
Helix 33	AD6	A	238	241	Right-handed 310
Helix 34	AD7	A	261	269	Right-handed alpha
Helix 35	AD8	D	28	32	Right-handed 310
Helix 36	AD9	D	87	91	Right-handed 310
Helix 37	AE1	D	193	197	Right-handed 310
Helix 38	AE2	D	209	212	Right-handed 310

There are 57 sheets in PDB entry 8EE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	9	10	first strand
Strand 2	Z	30	33	parallel
Strand 3	Z	41	49	anti-parallel
Strand 4	Z	136	143	anti-parallel
Strand 5	Z	164	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	21	25	first strand
Strand 2	Z	289	294	anti-parallel
Strand 3	Z	185	190	anti-parallel
Strand 4	Z	175	179	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	90	99	first strand
Strand 2	Z	109	129	anti-parallel
Strand 3	Z	55	72	anti-parallel
Strand 4	Z	225	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	90	99	first strand
Strand 2	Z	109	129	anti-parallel
Strand 3	Z	201	205	anti-parallel
Strand 4	Z	210	214	anti-parallel
Strand 5	Z	273	275	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	243	246	first strand
Strand 2	Z	254	257	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	312	320	first strand
Strand 2	Z	326	332	anti-parallel
Strand 3	Z	372	378	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	339	340	first strand
Strand 2	Z	364	365	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	343	346	first strand
Strand 2	Z	383	389	anti-parallel
Strand 3	Z	396	402	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	106	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	204	208	anti-parallel
Strand 3	H	213	217	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	4	first strand
Strand 2	L	17	23	anti-parallel
Strand 3	L	77	82	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	11	first strand
Strand 2	L	109	113	parallel
Strand 3	L	91	99	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	53	anti-parallel
Strand 6	L	56	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	11	first strand
Strand 2	L	109	113	parallel
Strand 3	L	91	99	anti-parallel
Strand 4	L	102	105	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	122	126	first strand
Strand 2	L	137	147	anti-parallel
Strand 3	L	180	189	anti-parallel
Strand 4	L	167	169	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	122	126	first strand
Strand 2	L	137	147	anti-parallel
Strand 3	L	180	189	anti-parallel
Strand 4	L	173	174	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	161	163	first strand
Strand 2	L	153	158	anti-parallel
Strand 3	L	199	205	anti-parallel
Strand 4	L	208	214	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	51	anti-parallel
Strand 4	E	281	284	anti-parallel
Strand 5	E	273	277	anti-parallel
Strand 6	E	210	214	anti-parallel
Strand 7	E	201	205	anti-parallel
Strand 8	E	109	128	anti-parallel
Strand 9	E	135	143	first strand
Strand 10	E	164	169	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	128	anti-parallel
Strand 3	E	201	205	anti-parallel
Strand 4	E	210	214	anti-parallel
Strand 5	E	273	277	anti-parallel
Strand 6	E	281	284	anti-parallel
Strand 7	E	38	51	anti-parallel
Strand 8	E	55	72	first strand
Strand 9	E	225	227	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	25	first strand
Strand 2	E	289	294	anti-parallel
Strand 3	E	185	190	anti-parallel
Strand 4	E	175	179	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	246	first strand
Strand 2	E	254	257	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	326	333	anti-parallel
Strand 3	E	319	320	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	326	333	anti-parallel
Strand 3	E	371	379	anti-parallel
Strand 4	E	357	358	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	364	365	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	343	344	first strand
Strand 2	E	383	389	anti-parallel
Strand 3	E	396	402	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	25	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	185	189	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	41	50	anti-parallel
Strand 3	B	135	143	anti-parallel
Strand 4	B	164	169	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	54	72	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	201	205	anti-parallel
Strand 4	B	210	214	anti-parallel
Strand 5	B	273	275	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	254	257	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	333	anti-parallel
Strand 3	B	371	379	anti-parallel
Strand 4	B	357	358	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	364	365	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	383	389	anti-parallel
Strand 3	B	396	402	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	11	first strand
Strand 2	C	109	113	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	53	anti-parallel
Strand 6	C	56	59	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	11	first strand
Strand 2	C	109	113	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	102	105	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	167	169	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	173	174	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	153	158	anti-parallel
Strand 3	C	199	205	anti-parallel
Strand 4	C	208	214	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	165	169	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	282	284	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	175	179	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	128	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	209	213	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	128	anti-parallel
Strand 3	A	55	72	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	254	257	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	386	389	anti-parallel
Strand 3	A	396	399	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	102	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	102	anti-parallel
Strand 4	D	105	111	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	145	153	anti-parallel
Strand 3	D	184	191	anti-parallel
Strand 4	D	171	173	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	145	153	anti-parallel
Strand 3	D	184	191	anti-parallel
Strand 4	D	177	178	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	204	208	anti-parallel
Strand 3	D	213	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EE8