Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EEA entry

There are 8 chains in PDB entry 8EEA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 382
B	MET 1	LEU 382
C	MET 1	LEU 460
D	MET 1	GLY 462
E	MET 1	GLY 462
F	MET 1	LEU 460
G	MET 1	ALA 239
H	MET 1	ALA 239

There are147 helices in PDB entry 8EEA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	54	60	Right-handed 310
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	68	72	Right-handed 310
Helix 5	AA5	A	118	136	Right-handed alpha
Helix 6	AA6	A	153	157	Right-handed 310
Helix 7	AA7	A	173	184	Right-handed 310
Helix 8	AA8	A	192	217	Right-handed alpha
Helix 9	AA9	A	224	251	Right-handed alpha
Helix 10	AB1	A	278	280	Right-handed 310
Helix 11	AB2	A	281	302	Right-handed alpha
Helix 12	AB3	A	308	313	Right-handed alpha
Helix 13	AB4	A	327	332	Right-handed alpha
Helix 14	AB5	A	333	342	Right-handed alpha
Helix 15	AB6	A	353	358	Right-handed 310
Helix 16	AB7	A	361	363	Right-handed 310
Helix 17	AB8	B	35	53	Right-handed alpha
Helix 18	AB9	B	54	60	Right-handed 310
Helix 19	AC1	B	62	66	Right-handed 310
Helix 20	AC2	B	68	72	Right-handed 310
Helix 21	AC3	B	118	136	Right-handed alpha
Helix 22	AC4	B	153	157	Right-handed 310
Helix 23	AC5	B	173	184	Right-handed 310
Helix 24	AC6	B	192	217	Right-handed alpha
Helix 25	AC7	B	225	251	Right-handed alpha
Helix 26	AC8	B	278	280	Right-handed 310
Helix 27	AC9	B	281	302	Right-handed alpha
Helix 28	AD1	B	303	306	Right-handed 310
Helix 29	AD2	B	308	313	Right-handed alpha
Helix 30	AD3	B	327	332	Right-handed alpha
Helix 31	AD4	B	333	342	Right-handed alpha
Helix 32	AD5	B	353	358	Right-handed 310
Helix 33	AD6	B	361	363	Right-handed 310
Helix 34	AD7	C	35	47	Right-handed alpha
Helix 35	AD8	C	47	52	Right-handed alpha
Helix 36	AD9	C	62	66	Right-handed 310
Helix 37	AE1	C	68	72	Right-handed 310
Helix 38	AE2	C	118	136	Right-handed alpha
Helix 39	AE3	C	175	181	Right-handed alpha
Helix 40	AE4	C	182	184	Right-handed 310
Helix 41	AE5	C	192	217	Right-handed alpha
Helix 42	AE6	C	225	247	Right-handed alpha
Helix 43	AE7	C	278	280	Right-handed 310
Helix 44	AE8	C	281	302	Right-handed alpha
Helix 45	AE9	C	303	307	Right-handed 310
Helix 46	AF1	C	308	313	Right-handed alpha
Helix 47	AF2	C	334	342	Right-handed alpha
Helix 48	AF3	C	353	358	Right-handed alpha
Helix 49	AF4	C	359	360	Right-handed 310
Helix 50	AF5	C	361	363	Right-handed 310
Helix 51	AF6	C	389	397	Right-handed alpha
Helix 52	AF7	C	408	421	Right-handed alpha
Helix 53	AF8	C	426	441	Right-handed alpha
Helix 54	AF9	C	444	457	Right-handed alpha
Helix 55	AG1	D	34	47	Right-handed alpha
Helix 56	AG2	D	47	53	Right-handed alpha
Helix 57	AG3	D	57	61	Right-handed 310
Helix 58	AG4	D	62	66	Right-handed 310
Helix 59	AG5	D	68	72	Right-handed 310
Helix 60	AG6	D	118	137	Right-handed alpha
Helix 61	AG7	D	175	180	Right-handed alpha
Helix 62	AG8	D	181	184	Right-handed 310
Helix 63	AG9	D	192	217	Right-handed alpha
Helix 64	AH1	D	220	251	Right-handed alpha
Helix 65	AH2	D	278	280	Right-handed 310
Helix 66	AH3	D	281	302	Right-handed alpha
Helix 67	AH4	D	327	332	Right-handed alpha
Helix 68	AH5	D	333	342	Right-handed alpha
Helix 69	AH6	D	353	358	Right-handed alpha
Helix 70	AH7	D	359	360	Right-handed 310
Helix 71	AH8	D	361	363	Right-handed 310
Helix 72	AH9	D	389	397	Right-handed alpha
Helix 73	AI1	D	408	421	Right-handed alpha
Helix 74	AI2	D	426	441	Right-handed alpha
Helix 75	AI3	D	444	461	Right-handed alpha
Helix 76	AI4	E	34	47	Right-handed alpha
Helix 77	AI5	E	47	53	Right-handed alpha
Helix 78	AI6	E	57	61	Right-handed 310
Helix 79	AI7	E	62	66	Right-handed 310
Helix 80	AI8	E	68	72	Right-handed 310
Helix 81	AI9	E	118	137	Right-handed alpha
Helix 82	AJ1	E	175	180	Right-handed alpha
Helix 83	AJ2	E	181	184	Right-handed 310
Helix 84	AJ3	E	192	217	Right-handed alpha
Helix 85	AJ4	E	220	251	Right-handed alpha
Helix 86	AJ5	E	278	280	Right-handed 310
Helix 87	AJ6	E	281	302	Right-handed alpha
Helix 88	AJ7	E	327	332	Right-handed alpha
Helix 89	AJ8	E	333	342	Right-handed alpha
Helix 90	AJ9	E	353	358	Right-handed alpha
Helix 91	AK1	E	359	360	Right-handed 310
Helix 92	AK2	E	361	363	Right-handed 310
Helix 93	AK3	E	389	397	Right-handed alpha
Helix 94	AK4	E	408	420	Right-handed alpha
Helix 95	AK5	E	426	441	Right-handed alpha
Helix 96	AK6	E	444	461	Right-handed alpha
Helix 97	AK7	F	35	47	Right-handed alpha
Helix 98	AK8	F	47	52	Right-handed alpha
Helix 99	AK9	F	54	59	Right-handed alpha
Helix 100	AL1	F	62	66	Right-handed 310
Helix 101	AL2	F	68	72	Right-handed 310
Helix 102	AL3	F	118	136	Right-handed alpha
Helix 103	AL4	F	175	181	Right-handed alpha
Helix 104	AL5	F	182	184	Right-handed 310
Helix 105	AL6	F	192	217	Right-handed alpha
Helix 106	AL7	F	225	247	Right-handed alpha
Helix 107	AL8	F	278	280	Right-handed 310
Helix 108	AL9	F	281	302	Right-handed alpha
Helix 109	AM1	F	303	307	Right-handed 310
Helix 110	AM2	F	308	313	Right-handed alpha
Helix 111	AM3	F	330	333	Right-handed 310
Helix 112	AM4	F	334	342	Right-handed alpha
Helix 113	AM5	F	353	358	Right-handed alpha
Helix 114	AM6	F	359	360	Right-handed 310
Helix 115	AM7	F	361	363	Right-handed 310
Helix 116	AM8	F	389	397	Right-handed alpha
Helix 117	AM9	F	408	421	Right-handed alpha
Helix 118	AN1	F	426	441	Right-handed alpha
Helix 119	AN2	F	444	457	Right-handed alpha
Helix 120	AN3	G	11	18	Right-handed alpha
Helix 121	AN4	G	24	35	Right-handed alpha
Helix 122	AN5	G	38	50	Right-handed alpha
Helix 123	AN6	G	60	65	Right-handed alpha
Helix 124	AN7	G	79	83	Right-handed 310
Helix 125	AN8	G	85	87	Right-handed 310
Helix 126	AN9	G	111	114	Right-handed 310
Helix 127	AO1	G	115	121	Right-handed alpha
Helix 128	AO2	G	135	137	Right-handed 310
Helix 129	AO3	G	156	169	Right-handed alpha
Helix 130	AO4	G	172	197	Right-handed alpha
Helix 131	AO5	G	203	209	Right-handed alpha
Helix 132	AO6	G	219	227	Right-handed alpha
Helix 133	AO7	G	227	238	Right-handed alpha
Helix 134	AO8	H	11	18	Right-handed alpha
Helix 135	AO9	H	24	35	Right-handed alpha
Helix 136	AP1	H	38	50	Right-handed alpha
Helix 137	AP2	H	60	65	Right-handed alpha
Helix 138	AP3	H	79	83	Right-handed 310
Helix 139	AP4	H	85	87	Right-handed 310
Helix 140	AP5	H	111	114	Right-handed 310
Helix 141	AP6	H	115	121	Right-handed alpha
Helix 142	AP7	H	135	137	Right-handed 310
Helix 143	AP8	H	156	169	Right-handed alpha
Helix 144	AP9	H	172	197	Right-handed alpha
Helix 145	AQ1	H	203	209	Right-handed alpha
Helix 146	AQ2	H	219	227	Right-handed alpha
Helix 147	AQ3	H	227	238	Right-handed alpha

There are 28 sheets in PDB entry 8EEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	20	first strand
Strand 2	A	2	11	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	102	109	anti-parallel
Strand 5	A	116	117	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	315	319	parallel
Strand 3	A	345	351	parallel
Strand 4	A	25	29	parallel
Strand 5	A	365	370	parallel
Strand 6	A	376	379	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	82	85	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	274	276	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	2	11	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	102	109	anti-parallel
Strand 5	B	116	117	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	315	319	parallel
Strand 3	B	345	351	parallel
Strand 4	B	25	29	parallel
Strand 5	B	365	369	parallel
Strand 6	B	377	379	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	82	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	264	268	anti-parallel
Strand 3	B	274	276	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	102	109	anti-parallel
Strand 5	C	116	117	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	315	319	parallel
Strand 3	C	345	351	parallel
Strand 4	C	25	29	parallel
Strand 5	C	365	369	parallel
Strand 6	C	377	379	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	82	85	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	258	first strand
Strand 2	C	264	269	anti-parallel
Strand 3	C	273	276	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	102	109	anti-parallel
Strand 5	D	116	117	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	152	first strand
Strand 2	D	315	319	parallel
Strand 3	D	345	350	parallel
Strand 4	D	25	29	parallel
Strand 5	D	365	370	parallel
Strand 6	D	376	379	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	84	86	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	258	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	273	276	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	2	9	anti-parallel
Strand 3	E	89	96	anti-parallel
Strand 4	E	102	109	anti-parallel
Strand 5	E	116	117	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	152	first strand
Strand 2	E	315	319	parallel
Strand 3	E	345	350	parallel
Strand 4	E	25	29	parallel
Strand 5	E	365	370	parallel
Strand 6	E	376	379	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	74	first strand
Strand 2	E	85	86	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	258	first strand
Strand 2	E	264	269	anti-parallel
Strand 3	E	273	276	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	2	9	anti-parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	102	109	anti-parallel
Strand 5	F	116	117	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	152	first strand
Strand 2	F	315	319	parallel
Strand 3	F	345	351	parallel
Strand 4	F	25	29	parallel
Strand 5	F	365	369	parallel
Strand 6	F	377	379	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	77	first strand
Strand 2	F	82	85	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	258	first strand
Strand 2	F	264	269	anti-parallel
Strand 3	F	273	276	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	72	first strand
Strand 2	G	89	93	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	141	first strand
Strand 2	G	147	149	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	72	first strand
Strand 2	H	89	93	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	141	first strand
Strand 2	H	147	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EEA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEA