Analysis of interatomic Contacts of Structural Units in PDB entry:
8EED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EED entry

There are 12 chains in PDB entry 8EED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	GLY 404
C	ILE 1	SER 403
D	ILE 1	SER 403
B	ILE 1	SER 403
H	VAL 2	SER 127
M	VAL 2	VAL 123
L	GLN 1	GLY 117
E	VAL 2	SER 124
N	SER 2	GLY 117
F	SER 2	LEU 116
I	VAL 2	ALA 126
J	SER 2	LEU 116

There are 33 helices in PDB entry 8EED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	215	219	Right-handed alpha
Helix 4	AA4	A	238	241	Right-handed 310
Helix 5	AA5	A	261	269	Right-handed alpha
Helix 6	AA6	C	215	220	Right-handed alpha
Helix 7	AA7	C	238	241	Right-handed 310
Helix 8	AA8	C	261	269	Right-handed alpha
Helix 9	AA9	D	82	86	Right-handed 310
Helix 10	AB1	D	181	183	Right-handed 310
Helix 11	AB2	D	238	241	Right-handed 310
Helix 12	AB3	D	261	267	Right-handed alpha
Helix 13	AB4	B	74	78	Right-handed 310
Helix 14	AB5	B	82	87	Right-handed 310
Helix 15	AB6	B	214	220	Right-handed alpha
Helix 16	AB7	B	238	241	Right-handed 310
Helix 17	AB8	B	261	267	Right-handed alpha
Helix 18	AB9	H	88	92	Right-handed 310
Helix 19	AC1	H	106	111	Right-handed 310
Helix 20	AC2	M	88	92	Right-handed 310
Helix 21	AC3	M	106	110	Right-handed 310
Helix 22	AC4	L	29	33	Right-handed 310
Helix 23	AC5	L	87	91	Right-handed 310
Helix 24	AC6	E	88	92	Right-handed 310
Helix 25	AC7	E	106	111	Right-handed 310
Helix 26	AC8	N	29	33	Right-handed 310
Helix 27	AC9	N	87	91	Right-handed 310
Helix 28	AD1	F	29	33	Right-handed 310
Helix 29	AD2	F	87	91	Right-handed 310
Helix 30	AD3	I	88	92	Right-handed 310
Helix 31	AD4	I	106	111	Right-handed 310
Helix 32	AD5	J	29	33	Right-handed 310
Helix 33	AD6	J	87	91	Right-handed 310

There are 56 sheets in PDB entry 8EED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	137	143	anti-parallel
Strand 5	A	164	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	290	294	anti-parallel
Strand 3	A	186	189	anti-parallel
Strand 4	A	175	178	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	55	63	anti-parallel
Strand 3	A	121	129	anti-parallel
Strand 4	A	201	205	anti-parallel
Strand 5	A	210	214	anti-parallel
Strand 6	A	274	275	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	73	first strand
Strand 2	A	112	118	anti-parallel
Strand 3	A	90	95	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	109	110	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	254	257	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	319	320	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	373	379	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	385	389	anti-parallel
Strand 3	A	396	400	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	136	143	anti-parallel
Strand 5	C	164	169	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	282	284	anti-parallel
Strand 5	C	274	277	anti-parallel
Strand 6	C	209	214	anti-parallel
Strand 7	C	201	206	anti-parallel
Strand 8	C	121	129	anti-parallel
Strand 9	C	54	63	anti-parallel
Strand 10	C	225	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	288	294	anti-parallel
Strand 3	C	185	189	anti-parallel
Strand 4	C	175	179	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	73	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	90	99	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	255	257	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	319	320	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	372	379	anti-parallel
Strand 4	C	357	358	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	364	365	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	383	388	anti-parallel
Strand 3	C	397	402	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	31	34	parallel
Strand 3	D	40	50	anti-parallel
Strand 4	D	135	143	anti-parallel
Strand 5	D	165	169	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	31	34	parallel
Strand 3	D	40	50	anti-parallel
Strand 4	D	282	283	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	289	294	anti-parallel
Strand 3	D	185	190	anti-parallel
Strand 4	D	175	179	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	109	129	anti-parallel
Strand 3	D	54	65	anti-parallel
Strand 4	D	225	226	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	99	first strand
Strand 2	D	109	129	anti-parallel
Strand 3	D	204	205	anti-parallel
Strand 4	D	210	212	anti-parallel
Strand 5	D	273	275	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	244	first strand
Strand 2	D	256	257	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	320	first strand
Strand 2	D	326	333	anti-parallel
Strand 3	D	371	379	anti-parallel
Strand 4	D	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	384	389	anti-parallel
Strand 3	D	396	401	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	165	169	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	282	283	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	185	189	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	202	206	anti-parallel
Strand 4	B	209	213	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	54	73	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	256	257	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	326	331	anti-parallel
Strand 3	B	373	379	anti-parallel
Strand 4	B	357	358	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	383	389	anti-parallel
Strand 3	B	399	402	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	47	52	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	93	99	anti-parallel
Strand 5	H	119	121	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	79	84	anti-parallel
Strand 4	M	69	74	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	61	first strand
Strand 2	M	47	52	anti-parallel
Strand 3	M	35	40	anti-parallel
Strand 4	M	93	100	anti-parallel
Strand 5	M	112	114	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	61	first strand
Strand 2	M	47	52	anti-parallel
Strand 3	M	35	40	anti-parallel
Strand 4	M	93	100	anti-parallel
Strand 5	M	119	121	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	111	115	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	54	anti-parallel
Strand 6	L	57	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	111	115	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	105	107	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	78	83	anti-parallel
Strand 3	L	68	73	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	79	84	anti-parallel
Strand 4	E	69	74	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	119	123	parallel
Strand 3	E	93	99	anti-parallel
Strand 4	E	35	40	anti-parallel
Strand 5	E	47	52	anti-parallel
Strand 6	E	59	61	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	111	115	parallel
Strand 3	N	93	100	anti-parallel
Strand 4	N	35	40	anti-parallel
Strand 5	N	47	54	anti-parallel
Strand 6	N	57	60	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	111	115	parallel
Strand 3	N	93	100	anti-parallel
Strand 4	N	104	106	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	23	first strand
Strand 2	N	78	84	anti-parallel
Strand 3	N	68	73	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	93	98	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	47	54	anti-parallel
Strand 6	F	57	60	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	93	98	anti-parallel
Strand 4	F	106	107	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	78	83	anti-parallel
Strand 3	F	68	73	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	73	74	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	61	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	34	40	anti-parallel
Strand 4	I	93	100	anti-parallel
Strand 5	I	114	115	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	61	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	34	40	anti-parallel
Strand 4	I	93	100	anti-parallel
Strand 5	I	119	121	anti-parallel

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There are 6 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	111	115	parallel
Strand 3	J	93	99	anti-parallel
Strand 4	J	35	40	anti-parallel
Strand 5	J	47	54	anti-parallel
Strand 6	J	57	60	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	111	115	parallel
Strand 3	J	93	99	anti-parallel
Strand 4	J	105	106	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	78	83	anti-parallel
Strand 3	J	68	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EED

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EED