Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EEE entry

There are 6 chains in PDB entry 8EEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Z
 ILE 1SER 403
E
 ILE 1SER 403
L
 PRO 2LEU 116
H
 VAL 2SER 126
A
 VAL 2ILE 227
B
 PRO 2LEU 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8EEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Z
82 87Right-handed 310
Helix 2
AA2
Z
131 133Right-handed 310
Helix 3
AA3
Z
148 152Right-handed 310
Helix 4
AA4
Z
181 183Right-handed 310
Helix 5
AA5
Z
214 219Right-handed alpha
Helix 6
AA6
Z
238 241Right-handed 310
Helix 7
AA7
Z
261 269Right-handed alpha
Helix 8
AA8
E
82 87Right-handed 310
Helix 9
AA9
E
131 133Right-handed 310
Helix 10
AB1
E
181 183Right-handed 310
Helix 11
AB2
E
215 219Right-handed alpha
Helix 12
AB3
E
238 241Right-handed 310
Helix 13
AB4
E
261 269Right-handed alpha
Helix 14
AB5
L
29 33Right-handed 310
Helix 15
AB6
H
87 91Right-handed 310
Helix 16
AB7
A
28 32Right-handed 310
Helix 17
AB8
A
62 65Right-handed 310
Helix 18
AB9
A
87 91Right-handed 310
Helix 19
AC1
A
170 172Right-handed 310
Helix 20
AC2
A
215 218Right-handed 310
Helix 21
AC3
B
29 33Right-handed 310
Helix 22
AC4
B
87 91Right-handed 310
Helix 23
AC5
B
131 136Right-handed alpha
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There are 37 sheets in PDB entry 8EEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
8 13first strand
Strand 2
Z
29 34parallel
Strand 3
Z
41 50anti-parallel
Strand 4
Z
135 143anti-parallel
Strand 5
Z
166 169anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
8 13first strand
Strand 2
Z
29 34parallel
Strand 3
Z
41 50anti-parallel
Strand 4
Z
282 284anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
21 25first strand
Strand 2
Z
289 294anti-parallel
Strand 3
Z
184 192anti-parallel
Strand 4
Z
175 180anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
90 99first strand
Strand 2
Z
109 129anti-parallel
Strand 3
Z
54 72anti-parallel
Strand 4
Z
225 226anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
90 99first strand
Strand 2
Z
109 129anti-parallel
Strand 3
Z
202 205anti-parallel
Strand 4
Z
210 213anti-parallel
Strand 5
Z
273 275anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
243 246first strand
Strand 2
Z
254 257anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
306 307first strand
Strand 2
Z
339 340parallel
Strand 3
Z
364 365anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
312 314first strand
Strand 2
Z
326 333anti-parallel
Strand 3
Z
319 320anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
312 314first strand
Strand 2
Z
326 333anti-parallel
Strand 3
Z
371 379anti-parallel
Strand 4
Z
357 358anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
343 344first strand
Strand 2
Z
383 389anti-parallel
Strand 3
Z
396 402anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 13first strand
Strand 2
E
29 34parallel
Strand 3
E
41 51anti-parallel
Strand 4
E
135 143anti-parallel
Strand 5
E
166 169anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 13first strand
Strand 2
E
29 34parallel
Strand 3
E
41 51anti-parallel
Strand 4
E
281 284anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 25first strand
Strand 2
E
289 294anti-parallel
Strand 3
E
184 189anti-parallel
Strand 4
E
175 180anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 99first strand
Strand 2
E
109 129anti-parallel
Strand 3
E
54 72anti-parallel
Strand 4
E
225 226anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 99first strand
Strand 2
E
109 129anti-parallel
Strand 3
E
201 205anti-parallel
Strand 4
E
210 214anti-parallel
Strand 5
E
273 274anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 246first strand
Strand 2
E
254 257anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
312 320first strand
Strand 2
E
326 333anti-parallel
Strand 3
E
371 379anti-parallel
Strand 4
E
357 358anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
339 340first strand
Strand 2
E
364 365anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
343 346first strand
Strand 2
E
383 389anti-parallel
Strand 3
E
396 402anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
17 24anti-parallel
Strand 3
L
78 84anti-parallel
Strand 4
L
68 73anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
112 114parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
57 60first strand
Strand 2
L
47 54anti-parallel
Strand 3
L
35 40anti-parallel
Strand 4
L
93 98anti-parallel
Strand 5
L
106 107anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 125parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 125parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
114 117anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
69 73anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
121 125parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
121 125parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
114 117anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
177 179anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
183 184anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
219 225anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
111 115parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
47 54anti-parallel
Strand 6
B
57 60anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
111 115parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
106 107anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
182 191anti-parallel
Strand 4
B
169 171anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
182 191anti-parallel
Strand 4
B
175 176anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
210 216anti-parallel
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