Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EEF entry

There are 2 chains in PDB entry 8EEF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	ARG 444
B	LYS 5	ARG 444

There are 38 helices in PDB entry 8EEF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	63	73	Right-handed alpha
Helix 3	AA3	A	101	116	Right-handed alpha
Helix 4	AA4	A	118	123	Right-handed alpha
Helix 5	AA5	A	130	134	Right-handed 310
Helix 6	AA6	A	140	152	Right-handed alpha
Helix 7	AA7	A	154	162	Right-handed alpha
Helix 8	AA8	A	165	180	Right-handed alpha
Helix 9	AA9	A	183	187	Right-handed 310
Helix 10	AB1	A	188	199	Right-handed alpha
Helix 11	AB2	A	202	211	Right-handed alpha
Helix 12	AB3	A	217	230	Right-handed alpha
Helix 13	AB4	A	270	277	Right-handed 310
Helix 14	AB5	A	284	294	Right-handed alpha
Helix 15	AB6	A	344	348	Right-handed 310
Helix 16	AB7	A	352	361	Right-handed alpha
Helix 17	AB8	A	398	403	Right-handed 310
Helix 18	AB9	A	413	417	Right-handed 310
Helix 19	AC1	A	424	444	Right-handed alpha
Helix 20	AC2	B	12	25	Right-handed alpha
Helix 21	AC3	B	63	73	Right-handed alpha
Helix 22	AC4	B	100	116	Right-handed alpha
Helix 23	AC5	B	118	123	Right-handed alpha
Helix 24	AC6	B	130	134	Right-handed 310
Helix 25	AC7	B	140	152	Right-handed alpha
Helix 26	AC8	B	154	162	Right-handed alpha
Helix 27	AC9	B	165	180	Right-handed alpha
Helix 28	AD1	B	183	187	Right-handed 310
Helix 29	AD2	B	188	199	Right-handed alpha
Helix 30	AD3	B	202	212	Right-handed alpha
Helix 31	AD4	B	219	230	Right-handed alpha
Helix 32	AD5	B	270	277	Right-handed 310
Helix 33	AD6	B	284	294	Right-handed alpha
Helix 34	AD7	B	344	348	Right-handed 310
Helix 35	AD8	B	352	361	Right-handed alpha
Helix 36	AD9	B	398	403	Right-handed 310
Helix 37	AE1	B	413	417	Right-handed 310
Helix 38	AE2	B	424	444	Right-handed alpha

There are 10 sheets in PDB entry 8EEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	6	9	parallel
Strand 3	A	264	267	parallel
Strand 4	A	409	411	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	50	53	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	213	215	anti-parallel
Strand 3	A	79	81	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	87	91	anti-parallel
Strand 3	A	312	315	parallel
Strand 4	A	324	331	anti-parallel
Strand 5	A	335	342	anti-parallel
Strand 6	A	300	307	anti-parallel
Strand 7	A	369	373	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	278	280	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	6	9	parallel
Strand 3	B	264	267	parallel
Strand 4	B	409	411	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	51	53	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	213	215	anti-parallel
Strand 3	B	79	81	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	89	91	anti-parallel
Strand 3	B	313	315	parallel
Strand 4	B	324	331	anti-parallel
Strand 5	B	335	342	anti-parallel
Strand 6	B	300	307	anti-parallel
Strand 7	B	369	374	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	250	254	anti-parallel
Strand 3	B	240	244	anti-parallel
Strand 4	B	278	280	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EEF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEF