Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EEM entry

There are 2 chains in PDB entry 8EEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ARG 444
B
 LYS 5ARG 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8EEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
63 73Right-handed alpha
Helix 3
AA3
A
101 116Right-handed alpha
Helix 4
AA4
A
118 123Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
140 152Right-handed alpha
Helix 7
AA7
A
154 162Right-handed alpha
Helix 8
AA8
A
165 180Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
188 198Right-handed alpha
Helix 11
AB2
A
202 211Right-handed alpha
Helix 12
AB3
A
219 230Right-handed alpha
Helix 13
AB4
A
270 277Right-handed 310
Helix 14
AB5
A
284 294Right-handed alpha
Helix 15
AB6
A
344 348Right-handed 310
Helix 16
AB7
A
352 362Right-handed alpha
Helix 17
AB8
A
376 380Right-handed 310
Helix 18
AB9
A
398 403Right-handed 310
Helix 19
AC1
A
413 417Right-handed 310
Helix 20
AC2
A
424 444Right-handed alpha
Helix 21
AC3
B
12 25Right-handed alpha
Helix 22
AC4
B
39 43Right-handed 310
Helix 23
AC5
B
63 73Right-handed alpha
Helix 24
AC6
B
101 116Right-handed alpha
Helix 25
AC7
B
118 123Right-handed alpha
Helix 26
AC8
B
130 134Right-handed 310
Helix 27
AC9
B
140 152Right-handed alpha
Helix 28
AD1
B
154 162Right-handed alpha
Helix 29
AD2
B
165 180Right-handed alpha
Helix 30
AD3
B
183 187Right-handed 310
Helix 31
AD4
B
188 198Right-handed alpha
Helix 32
AD5
B
202 211Right-handed alpha
Helix 33
AD6
B
217 230Right-handed alpha
Helix 34
AD7
B
270 277Right-handed 310
Helix 35
AD8
B
284 294Right-handed alpha
Helix 36
AD9
B
344 348Right-handed 310
Helix 37
AE1
B
352 361Right-handed alpha
Helix 38
AE2
B
376 380Right-handed 310
Helix 39
AE3
B
398 404Right-handed 310
Helix 40
AE4
B
413 417Right-handed 310
Helix 41
AE5
B
424 444Right-handed alpha
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There are 9 sheets in PDB entry 8EEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
6 9parallel
Strand 3
A
264 267parallel
Strand 4
A
409 411parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
50 53anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
213 215anti-parallel
Strand 3
A
79 81anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
312 315parallel
Strand 4
A
324 331anti-parallel
Strand 5
A
335 342anti-parallel
Strand 6
A
300 307anti-parallel
Strand 7
A
369 373anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
240 245anti-parallel
Strand 4
A
278 280parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
6 9parallel
Strand 3
B
264 267parallel
Strand 4
B
409 411parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
213 215anti-parallel
Strand 3
B
79 81anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
312 315parallel
Strand 4
B
324 331anti-parallel
Strand 5
B
335 342anti-parallel
Strand 6
B
300 307anti-parallel
Strand 7
B
369 373anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
250 254anti-parallel
Strand 3
B
240 245anti-parallel
Strand 4
B
278 280parallel
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