Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EEQ entry

There are 4 chains in PDB entry 8EEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 420	ASP 909
C	SER 420	ASP 909
B	VAL 67	LEU 362
D	VAL 67	LEU 146

There are 64 helices in PDB entry 8EEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	420	449	Right-handed alpha
Helix 2	AA2	A	455	472	Right-handed alpha
Helix 3	AA3	A	483	500	Right-handed alpha
Helix 4	AA4	A	503	525	Right-handed alpha
Helix 5	AA5	A	527	534	Right-handed 310
Helix 6	AA6	A	535	565	Right-handed alpha
Helix 7	AA7	A	590	611	Right-handed alpha
Helix 8	AA8	A	617	625	Right-handed alpha
Helix 9	AA9	A	626	631	Right-handed alpha
Helix 10	AB1	A	632	642	Right-handed alpha
Helix 11	AB2	A	678	682	Right-handed 310
Helix 12	AB3	A	685	704	Right-handed alpha
Helix 13	AB4	A	705	707	Right-handed 310
Helix 14	AB5	A	721	735	Right-handed alpha
Helix 15	AB6	A	776	792	Right-handed alpha
Helix 16	AB7	A	794	799	Right-handed alpha
Helix 17	AB8	A	802	820	Right-handed alpha
Helix 18	AB9	A	821	832	Right-handed alpha
Helix 19	AC1	A	847	871	Right-handed alpha
Helix 20	AC2	A	877	884	Right-handed alpha
Helix 21	AC3	A	884	897	Right-handed alpha
Helix 22	AC4	A	898	906	Right-handed alpha
Helix 23	AC5	C	421	449	Right-handed alpha
Helix 24	AC6	C	455	472	Right-handed alpha
Helix 25	AC7	C	483	500	Right-handed alpha
Helix 26	AC8	C	503	525	Right-handed alpha
Helix 27	AC9	C	527	534	Right-handed 310
Helix 28	AD1	C	535	565	Right-handed alpha
Helix 29	AD2	C	590	611	Right-handed alpha
Helix 30	AD3	C	617	625	Right-handed alpha
Helix 31	AD4	C	626	631	Right-handed alpha
Helix 32	AD5	C	632	642	Right-handed alpha
Helix 33	AD6	C	678	682	Right-handed 310
Helix 34	AD7	C	685	704	Right-handed alpha
Helix 35	AD8	C	705	707	Right-handed 310
Helix 36	AD9	C	721	735	Right-handed alpha
Helix 37	AE1	C	776	792	Right-handed alpha
Helix 38	AE2	C	794	799	Right-handed alpha
Helix 39	AE3	C	802	820	Right-handed alpha
Helix 40	AE4	C	821	832	Right-handed alpha
Helix 41	AE5	C	847	871	Right-handed alpha
Helix 42	AE6	C	877	884	Right-handed alpha
Helix 43	AE7	C	884	897	Right-handed alpha
Helix 44	AE8	C	898	906	Right-handed alpha
Helix 45	AE9	B	113	126	Right-handed alpha
Helix 46	AF1	B	137	152	Right-handed alpha
Helix 47	AF2	B	156	158	Right-handed 310
Helix 48	AF3	B	159	168	Right-handed alpha
Helix 49	AF4	B	173	178	Right-handed alpha
Helix 50	AF5	B	205	210	Right-handed alpha
Helix 51	AF6	B	291	305	Right-handed alpha
Helix 52	AF7	B	305	314	Right-handed alpha
Helix 53	AF8	B	317	331	Right-handed alpha
Helix 54	AF9	B	349	362	Right-handed alpha
Helix 55	AG1	D	113	126	Right-handed alpha
Helix 56	AG2	D	137	152	Right-handed alpha
Helix 57	AG3	D	156	158	Right-handed 310
Helix 58	AG4	D	159	168	Right-handed alpha
Helix 59	AG5	D	173	178	Right-handed alpha
Helix 60	AG6	D	204	210	Right-handed alpha
Helix 61	AG7	D	291	305	Right-handed alpha
Helix 62	AG8	D	305	314	Right-handed alpha
Helix 63	AG9	D	317	331	Right-handed alpha
Helix 64	AH1	D	349	361	Right-handed alpha

There are 8 sheets in PDB entry 8EEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	743	745	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	481	first strand
Strand 2	C	743	745	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	83	92	anti-parallel
Strand 3	B	68	77	anti-parallel
Strand 4	B	171	172	first strand

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	250	260	parallel
Strand 3	B	276	283	anti-parallel
Strand 4	B	235	240	parallel
Strand 5	B	68	77	parallel
Strand 6	B	83	92	anti-parallel
Strand 7	B	183	185	first strand

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	242	243	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	83	92	anti-parallel
Strand 3	D	68	77	anti-parallel
Strand 4	D	171	172	first strand

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	133	first strand
Strand 2	D	250	260	parallel
Strand 3	D	276	283	anti-parallel
Strand 4	D	235	240	parallel
Strand 5	D	68	77	parallel
Strand 6	D	83	92	anti-parallel
Strand 7	D	183	185	first strand

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	242	243	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEQ