Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EEX entry

There are 3 chains in PDB entry 8EEX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1601
B	ASN 3	ALA 750
C	U -15	G 21

There are 84 helices in PDB entry 8EEX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	30	36	Right-handed alpha
Helix 3	AA3	A	57	76	Right-handed alpha
Helix 4	AA4	A	94	98	Right-handed 310
Helix 5	AA5	A	123	129	Right-handed alpha
Helix 6	AA6	A	163	168	Right-handed alpha
Helix 7	AA7	A	211	225	Right-handed alpha
Helix 8	AA8	A	261	276	Right-handed alpha
Helix 9	AA9	A	278	280	Right-handed 310
Helix 10	AB1	A	281	291	Right-handed alpha
Helix 11	AB2	A	292	302	Right-handed 310
Helix 12	AB3	A	328	339	Right-handed alpha
Helix 13	AB4	A	340	343	Right-handed 310
Helix 14	AB5	A	344	364	Right-handed alpha
Helix 15	AB6	A	365	367	Right-handed 310
Helix 16	AB7	A	443	460	Right-handed alpha
Helix 17	AB8	A	474	481	Right-handed alpha
Helix 18	AB9	A	542	554	Right-handed alpha
Helix 19	AC1	A	562	566	Right-handed 310
Helix 20	AC2	A	584	594	Right-handed alpha
Helix 21	AC3	A	595	598	Right-handed 310
Helix 22	AC4	A	599	608	Right-handed alpha
Helix 23	AC5	A	642	649	Right-handed alpha
Helix 24	AC6	A	675	689	Right-handed alpha
Helix 25	AC7	A	699	701	Right-handed 310
Helix 26	AC8	A	708	715	Right-handed alpha
Helix 27	AC9	A	780	784	Right-handed alpha
Helix 28	AD1	A	785	801	Right-handed alpha
Helix 29	AD2	A	809	813	Right-handed 310
Helix 30	AD3	A	829	833	Right-handed 310
Helix 31	AD4	A	946	962	Right-handed alpha
Helix 32	AD5	A	1231	1247	Right-handed alpha
Helix 33	AD6	A	1300	1305	Right-handed 310
Helix 34	AD7	A	1321	1326	Right-handed 310
Helix 35	AD8	A	1330	1335	Right-handed alpha
Helix 36	AD9	A	1342	1349	Right-handed alpha
Helix 37	AE1	A	1395	1400	Right-handed alpha
Helix 38	AE2	A	1420	1426	Right-handed alpha
Helix 39	AE3	A	1464	1477	Right-handed alpha
Helix 40	AE4	A	1488	1492	Right-handed 310
Helix 41	AE5	A	1518	1535	Right-handed alpha
Helix 42	AE6	A	1538	1549	Right-handed alpha
Helix 43	AE7	A	1575	1580	Right-handed alpha
Helix 44	AE8	A	1585	1594	Right-handed alpha
Helix 45	AE9	B	4	14	Right-handed alpha
Helix 46	AF1	B	19	40	Right-handed alpha
Helix 47	AF2	B	41	46	Right-handed 310
Helix 48	AF3	B	52	66	Right-handed alpha
Helix 49	AF4	B	79	85	Right-handed alpha
Helix 50	AF5	B	92	112	Right-handed alpha
Helix 51	AF6	B	117	134	Right-handed alpha
Helix 52	AF7	B	143	164	Right-handed alpha
Helix 53	AF8	B	167	184	Right-handed alpha
Helix 54	AF9	B	191	203	Right-handed alpha
Helix 55	AG1	B	207	209	Right-handed 310
Helix 56	AG2	B	210	222	Right-handed alpha
Helix 57	AG3	B	223	225	Right-handed 310
Helix 58	AG4	B	226	233	Right-handed alpha
Helix 59	AG5	B	239	254	Right-handed alpha
Helix 60	AG6	B	256	270	Right-handed alpha
Helix 61	AG7	B	277	293	Right-handed alpha
Helix 62	AG8	B	296	309	Right-handed alpha
Helix 63	AG9	B	328	340	Right-handed alpha
Helix 64	AH1	B	342	352	Right-handed alpha
Helix 65	AH2	B	360	374	Right-handed alpha
Helix 66	AH3	B	376	391	Right-handed 310
Helix 67	AH4	B	415	419	Right-handed 310
Helix 68	AH5	B	431	437	Right-handed alpha
Helix 69	AH6	B	464	482	Right-handed alpha
Helix 70	AH7	B	485	500	Right-handed alpha
Helix 71	AH8	B	501	505	Right-handed 310
Helix 72	AH9	B	520	526	Right-handed 310
Helix 73	AI1	B	527	530	Right-handed 310
Helix 74	AI2	B	544	546	Right-handed 310
Helix 75	AI3	B	554	558	Right-handed 310
Helix 76	AI4	B	580	585	Right-handed alpha
Helix 77	AI5	B	595	603	Right-handed alpha
Helix 78	AI6	B	622	625	Right-handed 310
Helix 79	AI7	B	637	642	Right-handed alpha
Helix 80	AI8	B	656	662	Right-handed alpha
Helix 81	AI9	B	675	683	Right-handed alpha
Helix 82	AJ1	B	696	710	Right-handed alpha
Helix 83	AJ2	B	712	732	Right-handed alpha
Helix 84	AJ3	B	733	741	Right-handed alpha

There are 24 sheets in PDB entry 8EEX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	199	207	anti-parallel
Strand 3	A	2	11	anti-parallel
Strand 4	A	231	236	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	169	176	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	49	56	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	83	84	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	394	395	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	580	anti-parallel
Strand 5	A	557	558	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	580	anti-parallel
Strand 5	A	611	612	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	501	first strand
Strand 2	A	517	521	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	510	511	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	723	725	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	625	634	anti-parallel
Strand 6	A	817	823	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	A	696	697	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	1599	1601	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	868	first strand
Strand 2	A	1412	1415	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	938	939	first strand
Strand 2	A	942	945	anti-parallel
Strand 3	A	1362	1364	anti-parallel
Strand 4	A	1453	1463	anti-parallel
Strand 5	A	891	901	anti-parallel
Strand 6	A	1495	1506	anti-parallel
Strand 7	A	1483	1484	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1357	1359	first strand
Strand 2	A	1453	1463	anti-parallel
Strand 3	A	891	901	anti-parallel
Strand 4	A	1495	1506	anti-parallel
Strand 5	A	1512	1514	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	A	932	936	anti-parallel
Strand 3	A	1443	1446	parallel
Strand 4	A	1385	1387	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	978	first strand
Strand 2	A	1294	1296	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	321	324	anti-parallel
Strand 3	B	356	359	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	462	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	515	518	parallel
Strand 5	B	549	551	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	533	first strand
Strand 2	B	541	542	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	569	574	parallel
Strand 3	B	609	614	parallel
Strand 4	B	652	655	parallel
Strand 5	B	687	691	parallel
Strand 6	B	743	747	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	617	first strand
Strand 2	B	627	629	anti-parallel
Strand 3	B	634	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EEX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EEX