Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EF2 entry

There are 2 chains in PDB entry 8EF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 2CYS 228
L
 SER 2GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8EF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
65 67Right-handed 310
Helix 3
AA3
H
75 77Right-handed 310
Helix 4
AA4
H
88 92Right-handed 310
Helix 5
AA5
H
106 111Right-handed 310
Helix 6
AA6
H
139 144Right-handed alpha
Helix 7
AA7
H
168 170Right-handed 310
Helix 8
AA8
H
199 203Right-handed 310
Helix 9
AA9
H
213 216Right-handed 310
Helix 10
AB1
L
29 33Right-handed 310
Helix 11
AB2
L
87 91Right-handed 310
Helix 12
AB3
L
131 137Right-handed alpha
Helix 13
AB4
L
192 197Right-handed alpha
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There are 12 sheets in PDB entry 8EF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 123parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
47 53anti-parallel
Strand 6
H
59 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 123parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
114 115anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 136first strand
Strand 2
H
147 157anti-parallel
Strand 3
H
188 197anti-parallel
Strand 4
H
175 177anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 136first strand
Strand 2
H
147 157anti-parallel
Strand 3
H
188 197anti-parallel
Strand 4
H
181 182anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
163 166first strand
Strand 2
H
206 212anti-parallel
Strand 3
H
217 223anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
18 24anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
68 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
111 115parallel
Strand 3
L
92 99anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 52anti-parallel
Strand 6
L
58 60anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
111 115parallel
Strand 3
L
92 99anti-parallel
Strand 4
L
105 107anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
124 128first strand
Strand 2
L
139 149anti-parallel
Strand 3
L
182 191anti-parallel
Strand 4
L
169 171anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
124 128first strand
Strand 2
L
139 149anti-parallel
Strand 3
L
182 191anti-parallel
Strand 4
L
175 176anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
163 165first strand
Strand 2
L
155 160anti-parallel
Strand 3
L
201 207anti-parallel
Strand 4
L
210 216anti-parallel
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