Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EF3 entry

There are 4 chains in PDB entry 8EF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	GLU 218
B	SER 1	ALA 211
C	GLU 1	GLU 218
D	SER 1	ALA 211

There are 16 helices in PDB entry 8EF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	74	76	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	162	164	Right-handed 310
Helix 5	AA5	A	207	210	Right-handed 310
Helix 6	AA6	B	78	82	Right-handed 310
Helix 7	AA7	B	123	129	Right-handed alpha
Helix 8	AA8	B	184	189	Right-handed alpha
Helix 9	AA9	C	28	32	Right-handed 310
Helix 10	AB1	C	74	76	Right-handed 310
Helix 11	AB2	C	87	91	Right-handed 310
Helix 12	AB3	C	162	164	Right-handed 310
Helix 13	AB4	C	207	210	Right-handed 310
Helix 14	AB5	D	78	82	Right-handed 310
Helix 15	AB6	D	123	128	Right-handed alpha
Helix 16	AB7	D	184	188	Right-handed alpha

There are 24 sheets in PDB entry 8EF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	107	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	175	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	211	217	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	103	107	parallel
Strand 3	B	83	90	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	103	107	parallel
Strand 3	B	83	90	anti-parallel
Strand 4	B	97	99	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	61	66	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	131	141	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	131	141	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	167	168	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	147	152	anti-parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	202	208	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	107	110	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	175	176	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	206	anti-parallel
Strand 3	C	211	217	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	103	107	parallel
Strand 3	D	83	90	anti-parallel
Strand 4	D	33	37	anti-parallel
Strand 5	D	44	47	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	103	107	parallel
Strand 3	D	83	90	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	61	66	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	131	141	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	161	163	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	131	141	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	167	168	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	147	152	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	202	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF3