Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EF5 entry

There are 7 chains in PDB entry 8EF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 66	PHE 352
A	THR 4	PHE 354
B	ASP 5	ASN 340
C	ILE 9	LYS 64
E	VAL 2	LEU 248
M	SER 66	CYS 353
F	ASP 337	PHE 354

There are 41 helices in PDB entry 8EF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	66	98	Right-handed alpha
Helix 2	AA2	R	103	122	Right-handed alpha
Helix 3	AA3	R	122	133	Right-handed alpha
Helix 4	AA4	R	138	173	Right-handed alpha
Helix 5	AA5	R	173	181	Right-handed alpha
Helix 6	AA6	R	182	207	Right-handed alpha
Helix 7	AA7	R	226	243	Right-handed alpha
Helix 8	AA8	R	243	264	Right-handed alpha
Helix 9	AA9	R	270	308	Right-handed alpha
Helix 10	AB1	R	313	338	Right-handed alpha
Helix 11	AB2	R	342	352	Right-handed alpha
Helix 12	AB3	A	6	33	Right-handed alpha
Helix 13	AB4	A	42	44	Right-handed 310
Helix 14	AB5	A	45	55	Right-handed alpha
Helix 15	AB6	A	207	212	Right-handed alpha
Helix 16	AB7	A	213	216	Right-handed 310
Helix 17	AB8	A	228	231	Right-handed 310
Helix 18	AB9	A	241	255	Right-handed alpha
Helix 19	AC1	A	270	281	Right-handed alpha
Helix 20	AC2	A	295	310	Right-handed alpha
Helix 21	AC3	A	327	352	Right-handed alpha
Helix 22	AC4	B	6	26	Right-handed alpha
Helix 23	AC5	B	29	34	Right-handed alpha
Helix 24	AC6	C	10	24	Right-handed alpha
Helix 25	AC7	C	29	44	Right-handed alpha
Helix 26	AC8	E	28	32	Right-handed 310
Helix 27	AC9	E	53	56	Right-handed 310
Helix 28	AD1	E	62	65	Right-handed 310
Helix 29	AD2	E	87	91	Right-handed 310
Helix 30	AD3	M	67	98	Right-handed alpha
Helix 31	AD4	M	103	122	Right-handed alpha
Helix 32	AD5	M	122	133	Right-handed alpha
Helix 33	AD6	M	138	173	Right-handed alpha
Helix 34	AD7	M	173	181	Right-handed alpha
Helix 35	AD8	M	182	207	Right-handed alpha
Helix 36	AD9	M	226	243	Right-handed alpha
Helix 37	AE1	M	243	264	Right-handed alpha
Helix 38	AE2	M	270	308	Right-handed alpha
Helix 39	AE3	M	313	339	Right-handed alpha
Helix 40	AE4	M	342	352	Right-handed alpha
Helix 41	AE5	F	338	352	Right-handed alpha

There are 15 sheets in PDB entry 8EF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	208	213	first strand
Strand 2	R	216	221	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	227	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	186	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	161	first strand
Strand 2	E	212	217	anti-parallel
Strand 3	E	204	209	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	208	213	first strand
Strand 2	M	216	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF5