Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EF7 entry

There are 2 chains in PDB entry 8EF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 195LYS 960
B
 ALA 195LYS 960
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8EF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 223Right-handed alpha
Helix 2
AA2
A
223 228Right-handed alpha
Helix 3
AA3
A
228 253Right-handed alpha
Helix 4
AA4
A
263 279Right-handed alpha
Helix 5
AA5
A
281 286Right-handed alpha
Helix 6
AA6
A
300 310Right-handed alpha
Helix 7
AA7
A
352 368Right-handed alpha
Helix 8
AA8
A
413 427Right-handed alpha
Helix 9
AA9
A
442 446Right-handed 310
Helix 10
AB1
A
448 453Right-handed alpha
Helix 11
AB2
A
472 477Right-handed alpha
Helix 12
AB3
A
478 487Right-handed alpha
Helix 13
AB4
A
511 526Right-handed alpha
Helix 14
AB5
A
526 531Right-handed alpha
Helix 15
AB6
A
535 538Right-handed 310
Helix 16
AB7
A
539 582Right-handed alpha
Helix 17
AB8
A
589 610Right-handed alpha
Helix 18
AB9
A
612 635Right-handed alpha
Helix 19
AC1
A
636 641Right-handed alpha
Helix 20
AC2
A
645 663Right-handed alpha
Helix 21
AC3
A
664 687Right-handed alpha
Helix 22
AC4
A
689 693Right-handed 310
Helix 23
AC5
A
697 711Right-handed alpha
Helix 24
AC6
A
717 732Right-handed alpha
Helix 25
AC7
A
737 768Right-handed alpha
Helix 26
AC8
A
770 777Right-handed alpha
Helix 27
AC9
A
782 802Right-handed alpha
Helix 28
AD1
A
810 825Right-handed alpha
Helix 29
AD2
A
829 857Right-handed alpha
Helix 30
AD3
A
860 866Right-handed alpha
Helix 31
AD4
A
875 901Right-handed alpha
Helix 32
AD5
A
901 920Right-handed alpha
Helix 33
AD6
A
920 927Right-handed alpha
Helix 34
AD7
A
932 942Right-handed alpha
Helix 35
AD8
A
942 960Right-handed alpha
Helix 36
AD9
B
198 215Right-handed alpha
Helix 37
AE1
B
216 230Right-handed alpha
Helix 38
AE2
B
235 241Right-handed alpha
Helix 39
AE3
B
243 254Right-handed alpha
Helix 40
AE4
B
263 279Right-handed alpha
Helix 41
AE5
B
281 286Right-handed alpha
Helix 42
AE6
B
300 310Right-handed alpha
Helix 43
AE7
B
352 370Right-handed alpha
Helix 44
AE8
B
412 427Right-handed alpha
Helix 45
AE9
B
442 446Right-handed 310
Helix 46
AF1
B
447 456Right-handed alpha
Helix 47
AF2
B
468 475Right-handed alpha
Helix 48
AF3
B
478 487Right-handed alpha
Helix 49
AF4
B
511 526Right-handed alpha
Helix 50
AF5
B
526 531Right-handed alpha
Helix 51
AF6
B
535 539Right-handed 310
Helix 52
AF7
B
540 582Right-handed alpha
Helix 53
AF8
B
589 611Right-handed alpha
Helix 54
AF9
B
612 627Right-handed alpha
Helix 55
AG1
B
628 636Right-handed alpha
Helix 56
AG2
B
636 642Right-handed alpha
Helix 57
AG3
B
645 664Right-handed alpha
Helix 58
AG4
B
664 687Right-handed alpha
Helix 59
AG5
B
689 693Right-handed 310
Helix 60
AG6
B
697 712Right-handed alpha
Helix 61
AG7
B
717 732Right-handed alpha
Helix 62
AG8
B
737 768Right-handed alpha
Helix 63
AG9
B
770 778Right-handed alpha
Helix 64
AH1
B
782 802Right-handed alpha
Helix 65
AH2
B
810 825Right-handed alpha
Helix 66
AH3
B
829 857Right-handed alpha
Helix 67
AH4
B
859 866Right-handed alpha
Helix 68
AH5
B
874 901Right-handed alpha
Helix 69
AH6
B
901 920Right-handed alpha
Helix 70
AH7
B
930 959Right-handed alpha
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There are 2 sheets in PDB entry 8EF7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
338 341anti-parallel
Strand 3
A
383 388anti-parallel
Strand 4
A
327 333parallel
Strand 5
A
394 398anti-parallel
Strand 6
A
290 295parallel
Strand 7
A
431 438parallel
Strand 8
A
462 467parallel
Strand 9
A
497 500parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
338 341anti-parallel
Strand 3
B
382 388anti-parallel
Strand 4
B
327 333parallel
Strand 5
B
394 398anti-parallel
Strand 6
B
291 295parallel
Strand 7
B
432 438parallel
Strand 8
B
462 467parallel
Strand 9
B
498 500parallel
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