Analysis of interatomic Contacts of Structural Units in PDB entry:
8EF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EF9 entry

There are 3 chains in PDB entry 8EF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1979LEU 2714
E
 A 7 C 20
F
 A 9 G 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8EF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1988 2002Right-handed alpha
Helix 2
AA2
A
2095 2106Right-handed alpha
Helix 3
AA3
A
2121 2134Right-handed alpha
Helix 4
AA4
A
2143 2152Right-handed alpha
Helix 5
AA5
A
2159 2168Right-handed alpha
Helix 6
AA6
A
2169 2176Right-handed 310
Helix 7
AA7
A
2185 2211Right-handed alpha
Helix 8
AA8
A
2213 2220Right-handed alpha
Helix 9
AA9
A
2220 2235Right-handed alpha
Helix 10
AB1
A
2239 2266Right-handed alpha
Helix 11
AB2
A
2273 2279Right-handed alpha
Helix 12
AB3
A
2321 2326Right-handed 310
Helix 13
AB4
A
2332 2351Right-handed alpha
Helix 14
AB5
A
2351 2358Right-handed alpha
Helix 15
AB6
A
2389 2393Right-handed 310
Helix 16
AB7
A
2446 2451Right-handed 310
Helix 17
AB8
A
2466 2477Right-handed alpha
Helix 18
AB9
A
2478 2486Right-handed alpha
Helix 19
AC1
A
2490 2501Right-handed alpha
Helix 20
AC2
A
2503 2507Right-handed 310
Helix 21
AC3
A
2508 2524Right-handed alpha
Helix 22
AC4
A
2527 2536Right-handed alpha
Helix 23
AC5
A
2538 2553Right-handed alpha
Helix 24
AC6
A
2553 2571Right-handed alpha
Helix 25
AC7
A
2584 2588Right-handed 310
Helix 26
AC8
A
2590 2629Right-handed alpha
Helix 27
AC9
A
2674 2689Right-handed alpha
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There are 6 sheets in PDB entry 8EF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1981 1983first strand
Strand 2
A
2065 2070parallel
Strand 3
A
2054 2061anti-parallel
Strand 4
A
2004 2011anti-parallel
Strand 5
A
2116 2118parallel
Strand 6
A
2141 2142parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2236 2237first strand
Strand 2
A
2367 2370anti-parallel
Strand 3
A
2359 2362anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2397 2399first strand
Strand 2
A
2443 2445anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2660 2661first strand
Strand 2
A
2665 2667anti-parallel
Strand 3
A
2457 2464anti-parallel
Strand 4
A
2670 2671anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2660 2661first strand
Strand 2
A
2665 2667anti-parallel
Strand 3
A
2457 2464anti-parallel
Strand 4
A
2698 2705anti-parallel
Strand 5
A
2708 2711anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2572 2574first strand
Strand 2
A
2580 2582anti-parallel
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