Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFB entry

There are 5 chains in PDB entry 8EFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 THR 69PHE 352
A
 GLY 2PHE 354
B
 GLN 6ASN 340
C
 ILE 9LYS 64
E
 VAL 2LEU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8EFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
69 98Right-handed alpha
Helix 2
AA2
R
103 133Right-handed alpha
Helix 3
AA3
R
138 173Right-handed alpha
Helix 4
AA4
R
173 181Right-handed alpha
Helix 5
AA5
R
182 207Right-handed alpha
Helix 6
AA6
R
226 264Right-handed alpha
Helix 7
AA7
R
270 308Right-handed alpha
Helix 8
AA8
R
313 340Right-handed alpha
Helix 9
AA9
R
342 352Right-handed alpha
Helix 10
AB1
A
6 31Right-handed alpha
Helix 11
AB2
A
45 54Right-handed alpha
Helix 12
AB3
A
207 213Right-handed alpha
Helix 13
AB4
A
214 216Right-handed 310
Helix 14
AB5
A
228 231Right-handed 310
Helix 15
AB6
A
241 255Right-handed alpha
Helix 16
AB7
A
270 281Right-handed alpha
Helix 17
AB8
A
282 286Right-handed 310
Helix 18
AB9
A
295 311Right-handed alpha
Helix 19
AC1
A
327 352Right-handed alpha
Helix 20
AC2
B
7 26Right-handed alpha
Helix 21
AC3
B
29 34Right-handed alpha
Helix 22
AC4
C
10 24Right-handed alpha
Helix 23
AC5
C
29 44Right-handed alpha
Helix 24
AC6
E
28 32Right-handed 310
Helix 25
AC7
E
53 56Right-handed 310
Helix 26
AC8
E
87 91Right-handed 310
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There are 14 sheets in PDB entry 8EFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
208 213first strand
Strand 2
R
216 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
33 39parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
319 323parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
135 140anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
175 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
249 254anti-parallel
Strand 4
B
259 265anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
304 309anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 11first strand
Strand 2
E
115 118parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 11first strand
Strand 2
E
115 118parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 143first strand
Strand 2
E
156 161anti-parallel
Strand 3
E
212 217anti-parallel
Strand 4
E
204 209anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 149first strand
Strand 2
E
244 247parallel
Strand 3
E
227 232anti-parallel
Strand 4
E
175 180anti-parallel
Strand 5
E
186 191anti-parallel
Strand 6
E
195 196anti-parallel
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