Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFD entry

There are 2 chains in PDB entry 8EFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 796
B
 LYS 43VAL 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8EFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
12 17Right-handed alpha
Helix 3
AA3
A
21 28Right-handed alpha
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
A
97 111Right-handed alpha
Helix 6
AA6
A
131 134Right-handed 310
Helix 7
AA7
A
135 143Right-handed alpha
Helix 8
AA8
A
153 169Right-handed alpha
Helix 9
AA9
A
183 197Right-handed alpha
Helix 10
AB1
A
217 231Right-handed alpha
Helix 11
AB2
A
270 275Right-handed alpha
Helix 12
AB3
A
283 290Right-handed alpha
Helix 13
AB4
A
294 302Right-handed alpha
Helix 14
AB5
A
306 309Right-handed 310
Helix 15
AB6
A
310 315Right-handed alpha
Helix 16
AB7
A
324 338Right-handed alpha
Helix 17
AB8
A
343 359Right-handed alpha
Helix 18
AB9
A
379 389Right-handed alpha
Helix 19
AC1
A
391 401Right-handed alpha
Helix 20
AC2
A
416 448Right-handed alpha
Helix 21
AC3
A
472 504Right-handed alpha
Helix 22
AC4
A
513 526Right-handed alpha
Helix 23
AC5
A
529 540Right-handed alpha
Helix 24
AC6
A
544 557Right-handed alpha
Helix 25
AC7
A
592 598Right-handed alpha
Helix 26
AC8
A
602 611Right-handed alpha
Helix 27
AC9
A
615 620Right-handed alpha
Helix 28
AD1
A
647 664Right-handed alpha
Helix 29
AD2
A
685 696Right-handed alpha
Helix 30
AD3
A
697 707Right-handed alpha
Helix 31
AD4
A
715 723Right-handed alpha
Helix 32
AD5
A
739 749Right-handed alpha
Helix 33
AD6
A
752 754Right-handed 310
Helix 34
AD7
A
766 796Right-handed alpha
Helix 35
AD8
B
44 57Right-handed alpha
Helix 36
AD9
B
65 75Right-handed alpha
Helix 37
AE1
B
81 89Right-handed alpha
Helix 38
AE2
B
95 100Right-handed alpha
Helix 39
AE3
B
103 116Right-handed alpha
Helix 40
AE4
B
122 132Right-handed alpha
Helix 41
AE5
B
143 153Right-handed alpha
Helix 42
AE6
B
158 166Right-handed alpha
Helix 43
AE7
B
178 188Right-handed alpha
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There are 9 sheets in PDB entry 8EFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
61 63anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
121 124anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 266first strand
Strand 2
A
245 252anti-parallel
Strand 3
A
454 461anti-parallel
Strand 4
A
172 177parallel
Strand 5
A
666 671parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
241 242anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
373 374anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 406first strand
Strand 2
A
409 412anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 581first strand
Strand 2
A
584 588anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 714first strand
Strand 2
A
762 765anti-parallel
Strand 3
A
756 757anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
175 177anti-parallel
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