Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFF entry

There are 4 chains in PDB entry 8EFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 195LYS 960
B
 ALA 195LYS 960
C
 ALA 195LYS 960
D
 ALA 195LYS 960
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 8EFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 223Right-handed alpha
Helix 2
AA2
A
223 236Right-handed alpha
Helix 3
AA3
A
236 253Right-handed alpha
Helix 4
AA4
A
261 279Right-handed alpha
Helix 5
AA5
A
281 286Right-handed alpha
Helix 6
AA6
A
297 301Right-handed 310
Helix 7
AA7
A
302 307Right-handed alpha
Helix 8
AA8
A
352 370Right-handed alpha
Helix 9
AA9
A
413 427Right-handed alpha
Helix 10
AB1
A
442 446Right-handed 310
Helix 11
AB2
A
447 454Right-handed alpha
Helix 12
AB3
A
469 473Right-handed 310
Helix 13
AB4
A
478 488Right-handed alpha
Helix 14
AB5
A
511 526Right-handed alpha
Helix 15
AB6
A
526 531Right-handed alpha
Helix 16
AB7
A
535 540Right-handed alpha
Helix 17
AB8
A
540 582Right-handed alpha
Helix 18
AB9
A
589 610Right-handed alpha
Helix 19
AC1
A
612 636Right-handed alpha
Helix 20
AC2
A
636 641Right-handed alpha
Helix 21
AC3
A
645 664Right-handed alpha
Helix 22
AC4
A
664 687Right-handed alpha
Helix 23
AC5
A
694 696Right-handed 310
Helix 24
AC6
A
697 711Right-handed alpha
Helix 25
AC7
A
717 732Right-handed alpha
Helix 26
AC8
A
737 768Right-handed alpha
Helix 27
AC9
A
770 777Right-handed alpha
Helix 28
AD1
A
782 802Right-handed alpha
Helix 29
AD2
A
810 823Right-handed alpha
Helix 30
AD3
A
829 862Right-handed alpha
Helix 31
AD4
A
863 868Right-handed 310
Helix 32
AD5
A
874 901Right-handed alpha
Helix 33
AD6
A
901 920Right-handed alpha
Helix 34
AD7
A
920 928Right-handed alpha
Helix 35
AD8
A
932 957Right-handed alpha
Helix 36
AD9
A
958 960Right-handed 310
Helix 37
AE1
B
198 215Right-handed alpha
Helix 38
AE2
B
216 226Right-handed alpha
Helix 39
AE3
B
229 242Right-handed alpha
Helix 40
AE4
B
243 254Right-handed alpha
Helix 41
AE5
B
258 263Right-handed alpha
Helix 42
AE6
B
265 279Right-handed alpha
Helix 43
AE7
B
299 309Right-handed alpha
Helix 44
AE8
B
352 371Right-handed alpha
Helix 45
AE9
B
413 427Right-handed alpha
Helix 46
AF1
B
448 456Right-handed alpha
Helix 47
AF2
B
469 474Right-handed alpha
Helix 48
AF3
B
478 488Right-handed alpha
Helix 49
AF4
B
512 526Right-handed alpha
Helix 50
AF5
B
526 531Right-handed alpha
Helix 51
AF6
B
535 540Right-handed alpha
Helix 52
AF7
B
540 560Right-handed alpha
Helix 53
AF8
B
562 582Right-handed alpha
Helix 54
AF9
B
591 610Right-handed alpha
Helix 55
AG1
B
612 636Right-handed alpha
Helix 56
AG2
B
636 642Right-handed alpha
Helix 57
AG3
B
645 664Right-handed alpha
Helix 58
AG4
B
664 686Right-handed alpha
Helix 59
AG5
B
694 696Right-handed 310
Helix 60
AG6
B
697 712Right-handed alpha
Helix 61
AG7
B
717 732Right-handed alpha
Helix 62
AG8
B
737 768Right-handed alpha
Helix 63
AG9
B
770 775Right-handed alpha
Helix 64
AH1
B
782 800Right-handed alpha
Helix 65
AH2
B
810 824Right-handed alpha
Helix 66
AH3
B
829 857Right-handed alpha
Helix 67
AH4
B
875 901Right-handed alpha
Helix 68
AH5
B
901 920Right-handed alpha
Helix 69
AH6
B
920 928Right-handed alpha
Helix 70
AH7
B
931 960Right-handed alpha
Helix 71
AH8
C
198 223Right-handed alpha
Helix 72
AH9
C
223 236Right-handed alpha
Helix 73
AI1
C
236 253Right-handed alpha
Helix 74
AI2
C
261 279Right-handed alpha
Helix 75
AI3
C
281 286Right-handed alpha
Helix 76
AI4
C
297 301Right-handed 310
Helix 77
AI5
C
302 307Right-handed alpha
Helix 78
AI6
C
352 370Right-handed alpha
Helix 79
AI7
C
413 427Right-handed alpha
Helix 80
AI8
C
442 446Right-handed 310
Helix 81
AI9
C
447 454Right-handed alpha
Helix 82
AJ1
C
469 473Right-handed 310
Helix 83
AJ2
C
478 488Right-handed alpha
Helix 84
AJ3
C
511 526Right-handed alpha
Helix 85
AJ4
C
526 531Right-handed alpha
Helix 86
AJ5
C
535 540Right-handed alpha
Helix 87
AJ6
C
540 582Right-handed alpha
Helix 88
AJ7
C
589 610Right-handed alpha
Helix 89
AJ8
C
612 636Right-handed alpha
Helix 90
AJ9
C
636 641Right-handed alpha
Helix 91
AK1
C
645 664Right-handed alpha
Helix 92
AK2
C
664 687Right-handed alpha
Helix 93
AK3
C
694 696Right-handed 310
Helix 94
AK4
C
697 711Right-handed alpha
Helix 95
AK5
C
717 732Right-handed alpha
Helix 96
AK6
C
737 768Right-handed alpha
Helix 97
AK7
C
770 777Right-handed alpha
Helix 98
AK8
C
782 802Right-handed alpha
Helix 99
AK9
C
810 823Right-handed alpha
Helix 100
AL1
C
829 862Right-handed alpha
Helix 101
AL2
C
863 868Right-handed 310
Helix 102
AL3
C
874 901Right-handed alpha
Helix 103
AL4
C
901 920Right-handed alpha
Helix 104
AL5
C
920 928Right-handed alpha
Helix 105
AL6
C
932 957Right-handed alpha
Helix 106
AL7
C
958 960Right-handed 310
Helix 107
AL8
D
198 215Right-handed alpha
Helix 108
AL9
D
216 226Right-handed alpha
Helix 109
AM1
D
229 242Right-handed alpha
Helix 110
AM2
D
243 254Right-handed alpha
Helix 111
AM3
D
258 263Right-handed alpha
Helix 112
AM4
D
265 279Right-handed alpha
Helix 113
AM5
D
299 309Right-handed alpha
Helix 114
AM6
D
352 371Right-handed alpha
Helix 115
AM7
D
413 427Right-handed alpha
Helix 116
AM8
D
448 456Right-handed alpha
Helix 117
AM9
D
469 474Right-handed alpha
Helix 118
AN1
D
478 488Right-handed alpha
Helix 119
AN2
D
512 526Right-handed alpha
Helix 120
AN3
D
526 531Right-handed alpha
Helix 121
AN4
D
535 540Right-handed alpha
Helix 122
AN5
D
540 560Right-handed alpha
Helix 123
AN6
D
562 582Right-handed alpha
Helix 124
AN7
D
591 610Right-handed alpha
Helix 125
AN8
D
612 636Right-handed alpha
Helix 126
AN9
D
636 642Right-handed alpha
Helix 127
AO1
D
645 664Right-handed alpha
Helix 128
AO2
D
664 686Right-handed alpha
Helix 129
AO3
D
694 696Right-handed 310
Helix 130
AO4
D
697 712Right-handed alpha
Helix 131
AO5
D
717 732Right-handed alpha
Helix 132
AO6
D
737 768Right-handed alpha
Helix 133
AO7
D
770 775Right-handed alpha
Helix 134
AO8
D
782 800Right-handed alpha
Helix 135
AO9
D
810 824Right-handed alpha
Helix 136
AP1
D
829 857Right-handed alpha
Helix 137
AP2
D
875 901Right-handed alpha
Helix 138
AP3
D
901 920Right-handed alpha
Helix 139
AP4
D
920 928Right-handed alpha
Helix 140
AP5
D
931 960Right-handed alpha
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There are 4 sheets in PDB entry 8EFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
327 333parallel
Strand 4
A
394 398anti-parallel
Strand 5
A
290 295parallel
Strand 6
A
431 438parallel
Strand 7
A
462 467parallel
Strand 8
A
500 502parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
338 341anti-parallel
Strand 3
B
382 387anti-parallel
Strand 4
B
327 332parallel
Strand 5
B
394 398anti-parallel
Strand 6
B
291 295parallel
Strand 7
B
432 437parallel
Strand 8
B
462 466parallel
Strand 9
B
497 500parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 341first strand
Strand 2
C
382 388anti-parallel
Strand 3
C
327 333parallel
Strand 4
C
394 398anti-parallel
Strand 5
C
290 295parallel
Strand 6
C
431 438parallel
Strand 7
C
462 467parallel
Strand 8
C
500 502parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
346 349first strand
Strand 2
D
338 341anti-parallel
Strand 3
D
382 387anti-parallel
Strand 4
D
327 332parallel
Strand 5
D
394 398anti-parallel
Strand 6
D
291 295parallel
Strand 7
D
432 437parallel
Strand 8
D
462 466parallel
Strand 9
D
497 500parallel
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