Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFG entry

There is 1 chain in PDB entry 8EFG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EFG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
53 65Right-handed alpha
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
88 102Right-handed alpha
Helix 7
AA7
A
124 135Right-handed alpha
Helix 8
AA8
A
135 143Right-handed alpha
Helix 9
AA9
A
153 165Right-handed alpha
Helix 10
AB1
A
166 168Right-handed 310
Helix 11
AB2
A
179 189Right-handed alpha
Helix 12
AB3
A
196 201Right-handed 310
Helix 13
AB4
A
202 210Right-handed alpha
Helix 14
AB5
A
211 212Right-handed 310
Helix 15
AB6
A
213 215Right-handed 310
Helix 16
AB7
A
234 238Right-handed 310
Helix 17
AB8
A
259 261Right-handed 310
Helix 18
AB9
A
262 275Right-handed alpha
Helix 19
AC1
A
277 294Right-handed alpha
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There are 3 sheets in PDB entry 8EFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
44 49parallel
Strand 3
A
70 74parallel
Strand 4
A
107 116parallel
Strand 5
A
146 151parallel
Strand 6
A
171 173parallel
Strand 7
A
192 195parallel
Strand 8
A
217 219parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
25 26anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
253 254parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il