Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EFH entry

There are 8 chains in PDB entry 8EFH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	LEU 781
F	THR 5	PHE 375
B	THR 5	PHE 375
C	THR 5	PHE 375
D	THR 5	PHE 375
E	THR 5	PHE 375
O	SER 45	GLN 210
P	SER 45	GLN 210

There are134 helices in PDB entry 8EFH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	97	111	Right-handed alpha
Helix 4	AA4	A	131	134	Right-handed 310
Helix 5	AA5	A	135	143	Right-handed alpha
Helix 6	AA6	A	153	168	Right-handed alpha
Helix 7	AA7	A	183	197	Right-handed alpha
Helix 8	AA8	A	217	231	Right-handed alpha
Helix 9	AA9	A	269	275	Right-handed alpha
Helix 10	AB1	A	283	290	Right-handed alpha
Helix 11	AB2	A	294	302	Right-handed alpha
Helix 12	AB3	A	306	309	Right-handed 310
Helix 13	AB4	A	310	315	Right-handed alpha
Helix 14	AB5	A	324	338	Right-handed alpha
Helix 15	AB6	A	343	359	Right-handed alpha
Helix 16	AB7	A	379	389	Right-handed alpha
Helix 17	AB8	A	391	401	Right-handed alpha
Helix 18	AB9	A	416	448	Right-handed alpha
Helix 19	AC1	A	472	505	Right-handed alpha
Helix 20	AC2	A	517	525	Right-handed alpha
Helix 21	AC3	A	529	539	Right-handed alpha
Helix 22	AC4	A	544	557	Right-handed alpha
Helix 23	AC5	A	592	598	Right-handed alpha
Helix 24	AC6	A	603	610	Right-handed alpha
Helix 25	AC7	A	615	620	Right-handed alpha
Helix 26	AC8	A	646	663	Right-handed alpha
Helix 27	AC9	A	685	697	Right-handed alpha
Helix 28	AD1	A	697	708	Right-handed alpha
Helix 29	AD2	A	715	722	Right-handed alpha
Helix 30	AD3	A	723	726	Right-handed 310
Helix 31	AD4	A	739	748	Right-handed alpha
Helix 32	AD5	A	768	781	Right-handed alpha
Helix 33	AD6	F	56	61	Right-handed alpha
Helix 34	AD7	F	78	92	Right-handed alpha
Helix 35	AD8	F	112	126	Right-handed alpha
Helix 36	AD9	F	137	145	Right-handed alpha
Helix 37	AE1	F	172	175	Right-handed 310
Helix 38	AE2	F	181	194	Right-handed alpha
Helix 39	AE3	F	202	217	Right-handed alpha
Helix 40	AE4	F	223	233	Right-handed alpha
Helix 41	AE5	F	252	257	Right-handed alpha
Helix 42	AE6	F	258	262	Right-handed 310
Helix 43	AE7	F	263	268	Right-handed 310
Helix 44	AE8	F	273	285	Right-handed alpha
Helix 45	AE9	F	289	296	Right-handed alpha
Helix 46	AF1	F	301	306	Right-handed 310
Helix 47	AF2	F	308	321	Right-handed alpha
Helix 48	AF3	F	337	349	Right-handed alpha
Helix 49	AF4	F	352	356	Right-handed 310
Helix 50	AF5	F	359	366	Right-handed alpha
Helix 51	AF6	F	367	372	Right-handed 310
Helix 52	AF7	B	56	61	Right-handed alpha
Helix 53	AF8	B	78	92	Right-handed alpha
Helix 54	AF9	B	97	101	Right-handed 310
Helix 55	AG1	B	112	126	Right-handed alpha
Helix 56	AG2	B	137	145	Right-handed alpha
Helix 57	AG3	B	172	175	Right-handed 310
Helix 58	AG4	B	181	194	Right-handed alpha
Helix 59	AG5	B	195	197	Right-handed 310
Helix 60	AG6	B	202	217	Right-handed alpha
Helix 61	AG7	B	222	233	Right-handed alpha
Helix 62	AG8	B	252	257	Right-handed alpha
Helix 63	AG9	B	258	262	Right-handed 310
Helix 64	AH1	B	263	268	Right-handed 310
Helix 65	AH2	B	273	285	Right-handed alpha
Helix 66	AH3	B	289	296	Right-handed alpha
Helix 67	AH4	B	302	306	Right-handed 310
Helix 68	AH5	B	308	321	Right-handed alpha
Helix 69	AH6	B	337	349	Right-handed alpha
Helix 70	AH7	B	350	355	Right-handed 310
Helix 71	AH8	B	359	366	Right-handed alpha
Helix 72	AH9	B	367	372	Right-handed 310
Helix 73	AI1	C	56	61	Right-handed alpha
Helix 74	AI2	C	78	92	Right-handed alpha
Helix 75	AI3	C	97	101	Right-handed 310
Helix 76	AI4	C	112	126	Right-handed alpha
Helix 77	AI5	C	137	146	Right-handed alpha
Helix 78	AI6	C	172	175	Right-handed 310
Helix 79	AI7	C	181	197	Right-handed alpha
Helix 80	AI8	C	202	217	Right-handed alpha
Helix 81	AI9	C	222	231	Right-handed alpha
Helix 82	AJ1	C	252	257	Right-handed alpha
Helix 83	AJ2	C	258	262	Right-handed 310
Helix 84	AJ3	C	263	268	Right-handed 310
Helix 85	AJ4	C	273	284	Right-handed alpha
Helix 86	AJ5	C	289	296	Right-handed alpha
Helix 87	AJ6	C	302	306	Right-handed 310
Helix 88	AJ7	C	308	321	Right-handed alpha
Helix 89	AJ8	C	337	348	Right-handed alpha
Helix 90	AJ9	C	349	353	Right-handed 310
Helix 91	AK1	C	359	366	Right-handed alpha
Helix 92	AK2	C	367	372	Right-handed 310
Helix 93	AK3	D	55	61	Right-handed alpha
Helix 94	AK4	D	78	92	Right-handed alpha
Helix 95	AK5	D	97	101	Right-handed 310
Helix 96	AK6	D	112	126	Right-handed alpha
Helix 97	AK7	D	137	145	Right-handed alpha
Helix 98	AK8	D	172	175	Right-handed 310
Helix 99	AK9	D	181	194	Right-handed alpha
Helix 100	AL1	D	202	217	Right-handed alpha
Helix 101	AL2	D	222	233	Right-handed alpha
Helix 102	AL3	D	252	257	Right-handed alpha
Helix 103	AL4	D	258	262	Right-handed 310
Helix 104	AL5	D	263	268	Right-handed 310
Helix 105	AL6	D	273	285	Right-handed alpha
Helix 106	AL7	D	289	296	Right-handed alpha
Helix 107	AL8	D	301	306	Right-handed 310
Helix 108	AL9	D	308	321	Right-handed alpha
Helix 109	AM1	D	337	349	Right-handed alpha
Helix 110	AM2	D	350	356	Right-handed 310
Helix 111	AM3	D	359	366	Right-handed alpha
Helix 112	AM4	D	367	372	Right-handed 310
Helix 113	AM5	E	56	62	Right-handed 310
Helix 114	AM6	E	78	92	Right-handed alpha
Helix 115	AM7	E	97	101	Right-handed 310
Helix 116	AM8	E	112	126	Right-handed alpha
Helix 117	AM9	E	137	146	Right-handed alpha
Helix 118	AN1	E	172	175	Right-handed 310
Helix 119	AN2	E	181	194	Right-handed alpha
Helix 120	AN3	E	204	217	Right-handed alpha
Helix 121	AN4	E	222	233	Right-handed alpha
Helix 122	AN5	E	252	257	Right-handed alpha
Helix 123	AN6	E	258	262	Right-handed 310
Helix 124	AN7	E	263	268	Right-handed 310
Helix 125	AN8	E	273	285	Right-handed alpha
Helix 126	AN9	E	289	296	Right-handed alpha
Helix 127	AO1	E	302	306	Right-handed 310
Helix 128	AO2	E	308	321	Right-handed alpha
Helix 129	AO3	E	337	348	Right-handed alpha
Helix 130	AO4	E	349	355	Right-handed 310
Helix 131	AO5	E	359	366	Right-handed alpha
Helix 132	AO6	E	367	372	Right-handed 310
Helix 133	AO7	O	46	210	Right-handed alpha
Helix 134	AO8	P	46	208	Right-handed alpha

There are 32 sheets in PDB entry 8EFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	47	55	anti-parallel
Strand 3	A	58	63	anti-parallel
Strand 4	A	70	72	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	178	parallel
Strand 5	A	454	463	parallel
Strand 6	A	245	252	anti-parallel
Strand 7	A	258	266	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	373	374	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	409	412	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	580	anti-parallel
Strand 3	A	585	588	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	756	757	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	17	21	anti-parallel
Strand 3	F	8	11	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	178	first strand
Strand 2	F	160	163	anti-parallel
Strand 3	F	152	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	166	first strand
Strand 2	F	169	170	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	242	first strand
Strand 2	F	245	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	163	anti-parallel
Strand 3	B	152	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	169	170	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	245	250	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	8	9	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	152	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	169	170	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	245	250	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	163	anti-parallel
Strand 3	D	152	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	166	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	248	250	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	17	21	anti-parallel
Strand 3	E	8	11	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	240	first strand
Strand 2	E	248	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EFH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFH