Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFM entry

There are 2 chains in PDB entry 8EFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 181ALA 361
B
 ASN 181ASN 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8EFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 193Right-handed alpha
Helix 2
AA2
A
194 208Right-handed alpha
Helix 3
AA3
A
289 301Right-handed alpha
Helix 4
AA4
A
307 328Right-handed alpha
Helix 5
AA5
A
329 333Right-handed 310
Helix 6
AA6
A
346 348Right-handed 310
Helix 7
AA7
A
349 359Right-handed alpha
Helix 8
AA8
B
182 193Right-handed alpha
Helix 9
AA9
B
194 208Right-handed alpha
Helix 10
AB1
B
234 239Right-handed alpha
Helix 11
AB2
B
289 300Right-handed alpha
Helix 12
AB3
B
301 305Right-handed 310
Helix 13
AB4
B
307 328Right-handed alpha
Helix 14
AB5
B
350 359Right-handed alpha
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There are 5 sheets in PDB entry 8EFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
221 226parallel
Strand 3
A
336 341parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 247first strand
Strand 2
A
266 273anti-parallel
Strand 3
A
279 284anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 255first strand
Strand 2
A
258 263anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 247first strand
Strand 2
B
266 273anti-parallel
Strand 3
B
279 288anti-parallel
Strand 4
B
218 226parallel
Strand 5
B
336 341parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 255first strand
Strand 2
B
258 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il