Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFN entry

There are 2 chains in PDB entry 8EFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 170ALA 344
D
 ASN 170ALA 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8EFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 183Right-handed alpha
Helix 2
AA2
A
183 198Right-handed alpha
Helix 3
AA3
A
223 227Right-handed 310
Helix 4
AA4
A
276 286Right-handed alpha
Helix 5
AA5
A
292 313Right-handed alpha
Helix 6
AA6
A
314 319Right-handed alpha
Helix 7
AA7
A
327 332Right-handed 310
Helix 8
AA8
A
333 343Right-handed alpha
Helix 9
AA9
D
171 183Right-handed alpha
Helix 10
AB1
D
183 188Right-handed alpha
Helix 11
AB2
D
190 197Right-handed alpha
Helix 12
AB3
D
223 227Right-handed 310
Helix 13
AB4
D
276 286Right-handed alpha
Helix 14
AB5
D
292 313Right-handed alpha
Helix 15
AB6
D
327 332Right-handed 310
Helix 16
AB7
D
333 343Right-handed alpha
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There are 4 sheets in PDB entry 8EFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 236first strand
Strand 2
A
255 260anti-parallel
Strand 3
A
266 273anti-parallel
Strand 4
A
210 215parallel
Strand 5
A
321 326parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
247 252anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 236first strand
Strand 2
D
255 260anti-parallel
Strand 3
D
266 273anti-parallel
Strand 4
D
210 215parallel
Strand 5
D
321 326parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 244first strand
Strand 2
D
247 252anti-parallel
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