Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFP entry

There are 2 chains in PDB entry 8EFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 22ASP 264
C
 SER 3PRO 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 37Right-handed alpha
Helix 2
AA2
B
43 56Right-handed alpha
Helix 3
AA3
B
217 222Right-handed 310
Helix 4
AA4
B
237 249Right-handed alpha
Helix 5
AA5
C
4 18Right-handed alpha
Helix 6
AA6
C
57 62Right-handed alpha
Helix 7
AA7
C
68 77Right-handed alpha
Helix 8
AA8
C
126 136Right-handed alpha
Helix 9
AA9
C
143 150Right-handed alpha
Helix 10
AB1
C
180 186Right-handed alpha
Helix 11
AB2
C
248 262Right-handed alpha
Helix 12
AB3
C
264 279Right-handed alpha
Helix 13
AB4
C
281 299Right-handed alpha
Helix 14
AB5
C
307 315Right-handed alpha
Helix 15
AB6
C
322 339Right-handed alpha
Helix 16
AB7
C
342 353Right-handed alpha
Helix 17
AB8
C
354 369Right-handed alpha
Helix 18
AB9
C
371 376Right-handed alpha
Helix 19
AC1
C
383 404Right-handed alpha
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There are 3 sheets in PDB entry 8EFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
101 103parallel
Strand 3
B
121 123parallel
Strand 4
B
141 143parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
181 183parallel
Strand 3
B
204 207parallel
Strand 4
B
227 230parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
206 210anti-parallel
Strand 3
C
157 164anti-parallel
Strand 4
C
118 124anti-parallel
Strand 5
C
82 86anti-parallel
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