Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EFV entry

There are 8 chains in PDB entry 8EFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ARG 7	PRO 317
C	GLU 2	PRO 317
B	GLU 2	PRO 317
A	ALA 5	PRO 317
F	LEU 6	PRO 317
E	LEU 6	PRO 317
G	C 1	G 21
H	C 3	G 23

There are100 helices in PDB entry 8EFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	17	34	Right-handed alpha
Helix 2	AA2	D	50	63	Right-handed alpha
Helix 3	AA3	D	78	87	Right-handed alpha
Helix 4	AA4	D	99	102	Right-handed 310
Helix 5	AA5	D	103	108	Right-handed alpha
Helix 6	AA6	D	111	116	Right-handed alpha
Helix 7	AA7	D	147	151	Right-handed 310
Helix 8	AA8	D	152	158	Right-handed alpha
Helix 9	AA9	D	169	185	Right-handed alpha
Helix 10	AB1	D	189	199	Right-handed alpha
Helix 11	AB2	D	203	222	Right-handed alpha
Helix 12	AB3	D	227	238	Right-handed alpha
Helix 13	AB4	D	246	259	Right-handed alpha
Helix 14	AB5	D	266	275	Right-handed alpha
Helix 15	AB6	D	277	284	Right-handed alpha
Helix 16	AB7	D	285	290	Right-handed alpha
Helix 17	AB8	D	305	312	Right-handed alpha
Helix 18	AB9	C	17	34	Right-handed alpha
Helix 19	AC1	C	50	63	Right-handed alpha
Helix 20	AC2	C	78	88	Right-handed alpha
Helix 21	AC3	C	99	102	Right-handed 310
Helix 22	AC4	C	110	116	Right-handed alpha
Helix 23	AC5	C	147	151	Right-handed 310
Helix 24	AC6	C	152	157	Right-handed alpha
Helix 25	AC7	C	169	185	Right-handed alpha
Helix 26	AC8	C	189	200	Right-handed alpha
Helix 27	AC9	C	203	222	Right-handed alpha
Helix 28	AD1	C	227	239	Right-handed alpha
Helix 29	AD2	C	246	259	Right-handed alpha
Helix 30	AD3	C	266	274	Right-handed alpha
Helix 31	AD4	C	277	284	Right-handed alpha
Helix 32	AD5	C	285	292	Right-handed alpha
Helix 33	AD6	C	305	312	Right-handed alpha
Helix 34	AD7	B	17	34	Right-handed alpha
Helix 35	AD8	B	50	63	Right-handed alpha
Helix 36	AD9	B	78	87	Right-handed alpha
Helix 37	AE1	B	99	102	Right-handed 310
Helix 38	AE2	B	103	108	Right-handed alpha
Helix 39	AE3	B	110	115	Right-handed alpha
Helix 40	AE4	B	125	129	Right-handed 310
Helix 41	AE5	B	147	151	Right-handed 310
Helix 42	AE6	B	152	157	Right-handed alpha
Helix 43	AE7	B	169	185	Right-handed alpha
Helix 44	AE8	B	189	200	Right-handed alpha
Helix 45	AE9	B	203	222	Right-handed alpha
Helix 46	AF1	B	227	239	Right-handed alpha
Helix 47	AF2	B	246	259	Right-handed alpha
Helix 48	AF3	B	266	275	Right-handed alpha
Helix 49	AF4	B	277	285	Right-handed alpha
Helix 50	AF5	B	285	292	Right-handed alpha
Helix 51	AF6	B	305	313	Right-handed alpha
Helix 52	AF7	A	17	34	Right-handed alpha
Helix 53	AF8	A	50	63	Right-handed alpha
Helix 54	AF9	A	76	86	Right-handed alpha
Helix 55	AG1	A	99	102	Right-handed 310
Helix 56	AG2	A	103	109	Right-handed alpha
Helix 57	AG3	A	109	116	Right-handed alpha
Helix 58	AG4	A	147	151	Right-handed 310
Helix 59	AG5	A	152	157	Right-handed alpha
Helix 60	AG6	A	169	185	Right-handed alpha
Helix 61	AG7	A	189	200	Right-handed alpha
Helix 62	AG8	A	203	221	Right-handed alpha
Helix 63	AG9	A	227	239	Right-handed alpha
Helix 64	AH1	A	246	259	Right-handed alpha
Helix 65	AH2	A	266	274	Right-handed alpha
Helix 66	AH3	A	285	292	Right-handed alpha
Helix 67	AH4	A	305	312	Right-handed alpha
Helix 68	AH5	F	17	35	Right-handed alpha
Helix 69	AH6	F	50	63	Right-handed alpha
Helix 70	AH7	F	79	86	Right-handed alpha
Helix 71	AH8	F	99	102	Right-handed 310
Helix 72	AH9	F	106	116	Right-handed alpha
Helix 73	AI1	F	147	151	Right-handed 310
Helix 74	AI2	F	154	158	Right-handed 310
Helix 75	AI3	F	169	185	Right-handed alpha
Helix 76	AI4	F	189	200	Right-handed alpha
Helix 77	AI5	F	203	221	Right-handed alpha
Helix 78	AI6	F	227	238	Right-handed alpha
Helix 79	AI7	F	246	261	Right-handed alpha
Helix 80	AI8	F	266	271	Right-handed alpha
Helix 81	AI9	F	279	283	Right-handed 310
Helix 82	AJ1	F	285	292	Right-handed alpha
Helix 83	AJ2	F	305	312	Right-handed alpha
Helix 84	AJ3	E	22	35	Right-handed alpha
Helix 85	AJ4	E	50	63	Right-handed alpha
Helix 86	AJ5	E	72	74	Right-handed 310
Helix 87	AJ6	E	78	86	Right-handed alpha
Helix 88	AJ7	E	99	102	Right-handed 310
Helix 89	AJ8	E	106	108	Right-handed 310
Helix 90	AJ9	E	109	115	Right-handed alpha
Helix 91	AK1	E	147	151	Right-handed 310
Helix 92	AK2	E	152	157	Right-handed alpha
Helix 93	AK3	E	169	185	Right-handed alpha
Helix 94	AK4	E	189	200	Right-handed alpha
Helix 95	AK5	E	203	222	Right-handed alpha
Helix 96	AK6	E	227	239	Right-handed alpha
Helix 97	AK7	E	246	261	Right-handed alpha
Helix 98	AK8	E	268	274	Right-handed alpha
Helix 99	AK9	E	285	292	Right-handed alpha
Helix 100	AL1	E	306	312	Right-handed alpha

There are 19 sheets in PDB entry 8EFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	92	97	parallel
Strand 3	D	139	145	parallel
Strand 4	D	41	44	parallel
Strand 5	D	161	164	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	225	226	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	298	first strand
Strand 2	D	301	303	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	93	97	parallel
Strand 3	C	140	145	parallel
Strand 4	C	41	44	parallel
Strand 5	C	161	164	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	225	226	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	301	303	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	93	97	parallel
Strand 3	B	140	145	parallel
Strand 4	B	41	44	parallel
Strand 5	B	161	164	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	130	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	301	304	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	93	97	parallel
Strand 3	A	140	145	parallel
Strand 4	A	41	44	parallel
Strand 5	A	161	164	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	130	135	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	302	304	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	70	first strand
Strand 2	F	93	97	parallel
Strand 3	F	140	144	parallel
Strand 4	F	41	44	parallel
Strand 5	F	161	164	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	134	135	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	188	first strand
Strand 2	F	225	226	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	297	first strand
Strand 2	F	302	304	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	70	first strand
Strand 2	E	96	97	parallel
Strand 3	E	142	145	parallel
Strand 4	E	41	44	parallel
Strand 5	E	161	164	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	225	226	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	298	first strand
Strand 2	E	301	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFV